1. Petr Novak Avatar Petr Novak
  2. RepeatExplorer
  3. repex_tarean

Issues

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Issues (51–75 of 78)

Title T P Status Votes Assignee Created Updated Actions
#28: for large clusters sample blast.csv before using in R
enhancement critical resolved
#27: correct help in tarean.R
bug trivial resolved
#26: add confindence categories for satellite prediction
enhancement major resolved
#25: limit memory usage during dna_database annotation
bug critical invalid
#24: handle cases if not satellited is found(pass threshold)
bug critical resolved
#23: rDNA reporting in tarean mode
enhancement major resolved
#22: ORF reporting in tarean mode
enhancement major resolved
#21: Improve HTML output
bug major resolved
#20: optimize memory usage
enhancement major resolved
#19: improve prerun
enhancement major resolved
#18: make html report output for tarean batch mode
enhancement minor new
#17: improve PBS detection
enhancement major resolved
#16: adjust range of kmer calculation
proposal major new
#15: set some coverage threshold monomer reporting in tarean
enhancement major new
#14: make whole pipeline reproducible
enhancement major resolved
#13: pbs sites detection
enhancement major resolved
#12: skip loading packages if --help option is used
enhancement minor resolved
#11: add layout calculation for reads graph+export png - include paralelization!!
enhancement major resolved
#10: use config as singleton object to store global options
proposal major resolved
#9: make better locations of modules
proposal minor resolved
#8: skip unnecessary computation in tarean mode
enhancement minor resolved
#7: add option to set size of sample for input sequences
proposal minor resolved
#6: make suitable setup for number of cpu used
enhancement major resolved
#5: move adding new attributes to init in classes
task major resolved
#4: Rserve - make new server instance for each run
enhancement minor resolved
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