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2 commits behind master.
BarryFSmith
Merge branch 'barry/fix-hypre-struct' into next
Satish Balay
Merge branch 'master' into next
Satish Balay
Merge branch 'barry/test-harnes-vec-tests' into next
Satish Balay
fix for 64-bit-indices
Satish Balay
Merge branch 'barry/test-harnes-vec-tests' into next
Satish Balay
fix random/ex2 (complex) and missing output file warning
Satish Balay
fix diffs for examples in src/tx/examples/tutorials/eimex
Scott Kruger
Slight bug fix for handling names
Satish Balay
Merge remote-tracking branch 'origin/barry/test-harnes-vec-tests' into next
Satish Balay
gmakegentest: support multiple dependency files with 'depends:' keyword
Satish Balay
Merge remote-tracking branch 'origin/master' into next
Satish Balay
fix bad merge with barry/test-harnes-vec-tests
BarryFSmith
Merge branch 'barry/test-harnes-vec-tests' into next
BarryFSmith
Fix output for example, I had done the filtering wrong for the test Commit-type: bug-fix, testing-fix Reported-by: Satish Balay <balay@mcs.anl.gov>
BarryFSmith
Added two test output files I had accidently not put in git when converting to new harness Commit-type: i.e. bug-fix, testing-fix Reported-by: Satish Balay <balay@mcs.anl.gov>
BarryFSmith
Merge branch 'barry/test-harnes-vec-tests' into next
BarryFSmith
Directory was still listed in makefile but does not exist after testing changes Commit-type: bug-fix, testing-fix
BarryFSmith
Merge branch 'barry/test-harnes-vec-tests' into next
BarryFSmith
Convert another directory to new test harness Commit-type: testing-fix
BarryFSmith
convert another directory over to the new test harness Commit-type: testing-fix
BarryFSmith
remove dead test code from makefile, fix new test harness code to actually work on the example portably Commit-type: bug-fix, portability-fix, testing-fix
BarryFSmith
remove empty tutorials directory that only had bad makefile Commit-type: bug-fix, portability-fix, testing-fix,style-fix
BarryFSmith
another directory converted to new test harness Commit-type: testing-fix
BarryFSmith
convert another directory to new test harness Commit-type: testing-fix
BarryFSmith
Merge branch 'barry/test-harnes-vec-tests' into next
BarryFSmith
Fixes for various tests updated to new test harness Commit-type: bug-fix, portability-fix, testing-fix Reported-by: Satish Balay <balay@mcs.anl.gov>
Matthew Knepley
Merge branch 'knepley/feature-subdm-test' into next * knepley/feature-subdm-test: Plex ex26: Protect ExodusII stuff DM: DMCreateSubDM() field argument should be const
BarryFSmith
Merge branch 'barry/test-harnes-vec-tests' into next
BarryFSmith
test was not previously run so fix its output file Commit-type: bug-fix, testing-fix
BarryFSmith
converted another directory to new test harness Commit-type: testing-fix
BarryFSmith
convert another test directory Commit-type: testing-fix
BarryFSmith
another directory to new test harness Commit-type: testing-fix
BarryFSmith
moron Commit-type: testing-fix
BarryFSmith
convert another directory to new test harness Commit-type: testing-fix
Matthew Knepley
Merge branch 'knepley/feature-subdm-test' into next * knepley/feature-subdm-test: DM: Check IS block size in DMCreateSubDM() DM: DMCreateSubDM() should take a const array Plex ex26: Test for FEM dof layout and DMCreateSubDM() Contributed-by: Blaise A Bourdin <bourdin@lsu.edu> Conflicts: src/dm/impls/plex/examples/tests/makefile
BarryFSmith
convert another directory to new test harness Commit-type: testing-fix
BarryFSmith
Move examples to new harness, something is wrong with them Commit-type: testing-fix
Satish Balay
Merge branch 'master' into next
Satish Balay
Merge branch 'master' into next
Matthew Knepley
Merge branch 'knepley/fix-plex-multifield-eval' into next * knepley/fix-plex-multifield-eval: TS ex46: Newlines and some numerical jitter TS ex45: Newlines and some numerical jitter TS ex11: Fixed indentation and time step numbering SNES ex12: Update for DM view changes Plex tests: Update to new DM output Plex ex23: Use Nc not dim for vector fields Plex: Default section now ignores cells hanging off boundary meshes Plex: Viewer now report…
BarryFSmith
try to move over another directory depends: keyword starts to fail! Commit-type: testing-fix
BarryFSmith
start fixing makefile tests so they can be converted to new test harness NONE of these are normally run! Commit-type: testing-fix
BarryFSmith
another directory to new test harness Commit-type: testing-fix
Satish Balay
Merge branch 'knepley/fix-plex-interpolation-consistency' into next
BarryFSmith
convert examples to new harness that have depends: on other source code Commit-type: testing-fix
BarryFSmith
Merge branch 'barry/test-harnes-vec-tests' of bitbucket.org:petsc/petsc into barry/test-harnes-vec-tests
BarryFSmith
convert a couple more examples over to new test harness Commit-type: testing-fix
BarryFSmith
Convert another directory to new test harness Commit-type: testing-fix
BarryFSmith
Converted over another test directory to new test harness Commit-type: testing-fix
BarryFSmith
convert another directory to new test harness Commit-type: testing-fix
BarryFSmith
converted directory to new test harness with automatic system Commit-type: testing-fix
Satish Balay
Merge remote-tracking branch 'origin/mark/fftw-bug' into next
Satish Balay
Merge remote-tracking branch 'origin/Fande-Kong/remove_SNESHasDM' into next
Satish Balay
Merge remote-tracking branch 'origin/Fande-Kong/MatResetPreallocation' into next
Satish Balay
Merge remote-tracking branch 'origin/jose/tikz' into next
Satish Balay
Merge branch 'pr816/psanan/psanan/dmda-remove-old-loop/master' into next
Satish Balay
Merge branch 'pr800/haplav/haplav/feature-dmplex-ex5-set-partitioner-from-options/master' into next
Satish Balay
Merge branch 'scott/test-harness-report_tests_fix' into next
Matthew Knepley
Merge branch 'knepley/fix-plex-fvm-adjacency' into next * knepley/fix-plex-fvm-adjacency: PetscDS: Must initialize the default adjacency Conflicts: src/dm/dt/interface/dtds.c
Satish Balay
Merge branch 'master' into next
Matthew Knepley
Merge branch 'knepley/fix-plex-fvm-adjacency' into next * knepley/fix-plex-fvm-adjacency: Plex ex1: Added parallel test with ParMetis PetscDS: Can now store default adjacency when it has no fields - Get it with PETSC_DEFAULT for field
BarryFSmith
converted to new test harness with automatic system, only one issue reported directly to Scott Commit-type: testing-fix
Satish Balay
Merge branch 'balay/knl-test-use-memkind-and-intel-18' into next
Matthew Knepley
Merge remote-tracking branch 'origin/knepley/fix-plex-interpolation-consistency' into next * origin/knepley/fix-plex-interpolation-consistency: SNES ex12: Update output for new interpolation Plex ex19: Update build Plex ex7: Update interpolation Plex examples: Update interpolation Plex ex19: Fix allocation Plex: Update to new Interpolate interface Plex: DMPlexCopyCoordinates() does nothing if number of coordinate fields is not set Plex: Now DMPlexInterpolate() copies lab…
Matthew Knepley
Merge branch 'knepley/fix-plex-spectral-incomplete' into next * knepley/fix-plex-spectral-incomplete: Plex ex9: Updated to new spectral API
Satish Balay
Merge branch 'master' into next
Matthew Knepley
Merge branch 'knepley/fix-plex-geometry-3d-init' into next * knepley/fix-plex-geometry-3d-init: Plex: Fixed array initialization Bib: More refs test: remove runex13f90 as its now converted to new test suite fix win32 crash. This test was previously run with '-n 4' - so restoring it Conflicts: src/dm/examples/tutorials/ex13f90.F90
Matthew Knepley
Merge branch 'knepley/fix-plex-multifield-eval' into next * knepley/fix-plex-multifield-eval: PetscDS: Now allow a hierarchy of subspaces
BarryFSmith
Merge branch 'barry/fortran-PetscSFBcastBegin' into next
Matthew Knepley
Merge branch 'knepley/fix-plex-spectral-incomplete' into next * knepley/fix-plex-spectral-incomplete: Plex ex6: Update to new spectral permutation interface Plex: DMPlexCreateSpectralClosurePermutation() now takes a point argument - This allows the user to have the solution only partially supported in the domain - Give PETSC_DETERMINE for the prior behavior - Give an edge or cell which supports the field
Hong Zhang
Merge branch 'hzhang/fix-Matdup_ptap/maint' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
Satish Balay
Merge branch 'master' into next
Stefano Zampini
Merge remote-tracking branch 'origin/stefano_zampini/example-bddc-3levels' into next
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
BarryFSmith
Merge branch 'next' of bitbucket.org:petsc/petsc into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
Matthew Knepley
Merge branch 'knepley/fix-plex-fvm-adjacency' into next * knepley/fix-plex-fvm-adjacency: Plex+DS: Moved adjacency information completely to DS - The Plex versions now just delegate to DS - Defaults in DS are clearer - Input to GetAdjacency are optional tests: add 'PETSC_HAVE_C99' flag - so that 'requires: c99' can be used in the test suite
Matthew Knepley
Merge branch 'knepley/feature-xdmf-particles' into next * knepley/feature-xdmf-particles: XDMF: Only write particle section if you have particles
Matthew Knepley
Merge branch 'knepley/fix-plex-multifield-eval' into next * knepley/fix-plex-multifield-eval: Plex ex23: Added all types of projection iterations Plex: Fixed projection routines when we iterate over a surface with volume field and surface aux fields - If we are iterating over a surface with volume input, then the effective DS is the height=1 subspace - Made DS an argument for projection functions - Only allow iteration over a surface with volume inpu…
Matthew Knepley
Merge branch 'knepley/fix-plex-proj-ds' into next * knepley/fix-plex-proj-ds: PetscDS: The x[] array should be the size of the embedding space DM: Should do its best to automatically set the embedding dimension for the DS PetscDS: Needs to know the embedding dimension
Matthew Knepley
Merge branch 'knepley/fix-l2-projection-submesh' into next * knepley/fix-l2-projection-submesh: Plex+FEM: Now L2 Diff applies boundary values, instead of projecting the input function Plex: Added DMPlexComputeL2DiffLocal() - Fix docs to say that DM version uses global vectors Plex: Now the L2 diff can work on sub meshes
Matthew Knepley
Merge branch 'knepley/feature-adaptor-plex' into next * knepley/feature-adaptor-plex: Adaptor: Silly casts for MS
Stefano Zampini
Merge branch 'stefano_zampini/example-bddc-3levels' into next
BarryFSmith
Merge branch 'barry/fortran-PetscSFBcastBegin' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/fortran-PetscSFBcastBegin' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
Stefano Zampini
Merge branch 'stefano_zampini/example-bddc-3levels' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/vec-to-test-harness' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
Satish Balay
Merge branch 'master' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
Stefano Zampini
Merge branch 'stefano_zampini/example-bddc-3levels' into next
Stefano Zampini
Merge branch 'stefano_zampini/example-bddc-3levels' into next
Satish Balay
Merge remote-tracking branch 'origin/hongzh/remove-bitarray-ell' into next
Satish Balay
Merge branch 'balay/configure-cleanup-link-cmd' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
Satish Balay
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
Satish Balay
Merge branch 'stefano_zampini/example-bddc-3levels' into next
Satish Balay
Merge branch 'barry/move-to-new-test-harness' into next
Satish Balay
Merge branch 'barry/fix-kspcgls' into next
Satish Balay
Merge branch 'barry/move-to-new-test-harness' into next
Satish Balay
Merge branch 'knepley/fix-plex-bc-multiple' into next
BarryFSmith
Merge branch 'master' into next
Satish Balay
Merge branch 'scott/test-harness-improve2' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
Matthew Knepley
Merge branch 'knepley/fix-plex-bc-multiple' into next * knepley/fix-plex-bc-multiple: Plex: Bad merge for composed functions Mat: Fix doc error DM: Fix misspelling Plex: Now pass affected components through DMPlexVecSetFieldClosure_Internal() - I only changed the BC update function
Satish Balay
Merge branch 'balay/configure-cleanup-link-cmd' into next
Satish Balay
Merge branch 'hongzh/remove-bitarray-ell' into next
Satish Balay
Merge remote-tracking branch 'origin/hongzh/remove-bitarray-ell' into next
Matthew Knepley
Merge remote-tracking branch 'origin/knepley/fix-plex-med-orientation' into next * origin/knepley/fix-plex-med-orientation: Plex+MED: It appears that MED, at least that produced by GMsh, inverts test and hexes - Just copied the code from GMsh
Matthew Knepley
Merge branch 'knepley/fix-ds-memleak' into next * knepley/fix-ds-memleak: PetscDS: Fix memory leak
Matthew Knepley
Merge branch 'knepley/feature-rigid-bodies' into next * knepley/feature-rigid-bodies: Plex: Added declaration Plex: Added DMPlexCreateRigidBodies() - Handles disconnected pieces, like sides of a fault DM: Added DMProjectFunctionLabel()
Satish Balay
Merge branch 'barry/move-to-new-test-harness' into next
Satish Balay
Merge branch 'barry/fortran-PetscSFBcastBegin' into next
Stefano Zampini
Merge branch 'stefano_zampini/optimize-tsadjointstep-rk' into next
Stefano Zampini
Merge branch 'stefano_zampini/example-bddc-3levels' into next
Satish Balay
Merge branch 'barry/move-to-new-test-harness' into next
Satish Balay
Merge branch 'scott/test-harness-improve2' into next
Satish Balay
Merge branch 'scott/test-harness-improve2' into next
BarryFSmith
Merge branch 'next' of bitbucket.org:petsc/petsc into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
Satish Balay
Merge remote-tracking branch 'origin/hongzh/remove-bitarray-ell' into next
Satish Balay
Merge branch 'scott/test-harness-improve2' into next
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/fix-kspcgls' into next
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'barry/vec-to-test-harness' into next
BarryFSmith
Merge branch 'barry/vec-to-test-harness' into next
Stefano Zampini
Merge branch 'stefano_zampini/example-bddc-3levels' into next
Jed Brown
Merge branch 'jed/pc-composite-nozero' into next * jed/pc-composite-nozero: PCComposite: remove VecSet(work, 0.0) before PCApply
Matthew Knepley
Merge branch 'knepley/fix-snes-destroy-coarsenhook' into next * knepley/fix-snes-destroy-coarsenhook: SNES: SNESDestroy() can be called with snes->dm == NULL gmakegentest: also exclude .#filenames created by emacs
Matthew Knepley
Merge branch 'knepley/fix-vec-hdf5-output' into next * knepley/fix-vec-hdf5-output: Vec+HDF5: Fix output for complex - Need to check for empty group name
BarryFSmith
Merge branch 'barry/move-to-new-test-harness' into next
BarryFSmith
Merge branch 'barry/pccomposite-only-propagate-if-not-set' into next
Lisandro Dalcin
Merge branch 'dalcinl/dmplex-gmsh/master' into next
BarryFSmith
Merge branch 'barry/fix-kspcgls' into next
BarryFSmith
Merge branch 'barry/fortran-PetscSFBcastBegin' into next
BarryFSmith
Merge branch 'barry/fortran-PetscSFBcastBegin' into next
BarryFSmith
Merge branch 'barry/fortran-PetscSFBcastBegin' into next
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
BarryFSmith
Merge branch 'barry/fix-matcreatenest-lawrencemitchell' into next
BarryFSmith
Merge branch 'pr803/acroucher/acroucher/fix-IS-global-to-local-mapping-block/master' into next
BarryFSmith
Merge branch 'barry/fix-matcreatenest-lawrencemitchell' into next
Jed Brown
Merge branch 'master' into next * master: Spell check: interger -> integer petscsys.h : partial man page cleanup configure exodusii: pass HDF5_DIR to Exodus cmake Docs: DMPlex man page and source comments fixes Docs: Manual: clarifications for DMPlex chapter
Lisandro Dalcin
Merge branch 'dalcinl/dmplex-gmsh/master' into next
Lisandro Dalcin
Merge branch 'dalcinl/dmplex-gmsh/master' into next
Satish Balay
Merge branch 'master' into next
Satish Balay
Merge branch 'pr795/pieter_ghysels/update-strumpack-2.1.0/master' into next
Lisandro Dalcin
Merge branch 'master' into next
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'master' into next
Satish Balay
Merge remote-tracking branch 'origin/scott/test-harness-installtest' into next
Stefano Zampini
Merge remote-tracking branch 'origin/master' into next
Stefano Zampini
Merge remote-tracking branch 'origin/master' into next
BarryFSmith
Merge branch 'barry/vec-to-test-harness' into next
Jed Brown
Merge branch 'master' into next * master: Bib: Added refs Reported-by: Marco Schauer <m.schauer@tu-braunschweig.de>. Typo in help menu szlib: add fallback url
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
Matthew Knepley
Merge branch 'knepley/feature-adaptor-plex' into next * knepley/feature-adaptor-plex: SNES ex12: Fix requirements for test - Without pragmatic, the test falls back to regular refinement which gives different sizes
Stefano Zampini
Merge branch 'stefano_zampini/feature-glvis-homesh' into next
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
Matthew Knepley
Merge branch 'knepley/feature-adaptor-plex' into next * knepley/feature-adaptor-plex: SNES ex12: Fixed test requirements SNES ex12: Fixed AMR tests - Cleaned up use of r Vec - Updated output DMAdaptor: Fixes handling of original Vec and DM - Fix handling of input vector x - Only LABEL needs a Plex conversion
Jed Brown
Merge branch 'jed/fix-matcreatempibaij/maint' into next [issue #195] * jed/fix-matcreatempibaij/maint: MatCreateMPIBAIJWithArrays: call MatSetUp before MatSetOption [fix #195]
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
Jed Brown
Merge branch 'jed/fix-matcreatempibaij/maint' into next [issue #195] * jed/fix-matcreatempibaij/maint: MatCreateMPIBAIJWithArrays: fix MPISBAIJ -> MPIBAIJ [fix #195]
Stefano Zampini
Merge branch 'stefano_zampini/feature-glvis-homesh' into next
Satish Balay
Merge branch 'barry/fortran-PetscSFBcastBegin' into next
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
Satish Balay
Merge remote-tracking branch 'origin/knepley/feature-adaptor-plex' into next
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
BarryFSmith
Merge branch 'barry/ssisc-spectral-adjoint' into next
Satish Balay
Merge branch 'barry/fortran-PetscSFBcastBegin' into next
Satish Balay
Merge remote-tracking branch 'origin/barry/snes-view-display-fd' into next
Satish Balay
Merge remote-tracking branch 'origin/barry/remove-petscdatatype-dmgetworkarray' into next
Satish Balay
set next to use PETSC_VERSION_RELEASE -2
BarryFSmith
Bug fixes for MATHYPRESTRUCT hypre struct matrix, the interface was badly broken Commit-type: bug-fix, testing-fix Funded-by: ECP Time: 5 hours Reported-by: Henrik Buesing <HBuesing@eonerc.rwth-aachen.de>