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1 commit behind master.
Satish Balay
Merge branch 'balay/fix-cygwin-ex1f-hang/maint' into next
Satish Balay
Merge branch 'balay/fix-uninstall-rm/maint' into next
Satish Balay
cygwin: workarroubd src/sys/examples/tests/ex1f hang during backtrace. balay@ps4 ~/petsc/src/sys/examples/tests $ ./ex1f [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Error message [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.8.3-1788-g3483735f6a GIT Date: 2018-02-25 19:19:36 -0600 […
BarryFSmith
Merge branch 'barry/cleanup-bjacobi' into next
BarryFSmith
get rid of unneeded PC_ApplyOnMproc, fix manual page for parallel blocks for PCBJACOBI Commit-type: style-fix, documentation
Satish Balay
Revert "unstall now deletes petsc specific directories created by PETSc" There should never be 'rmtree' in uninstall script - as prefix is usually a common location shared by multiple packages. This reverts commit e22ab8e6ea0e27378051f3cece371df7452c4e2f.
Jed Brown
Merge branch 'jed/fix-bitbucket-pipelines/maint' into next * jed/fix-bitbucket-pipelines/maint: bitbucket-pipelines: apt-get update to avoid 404 errors
Jed Brown
Merge branch 'jed/fix-module-quoting/maint' into next * jed/fix-module-quoting/maint: configure: fix quoting of paths for Tcl modules [fix #207]
Karl Rupp
Merge branch 'karlrupp/fix-public-access-cublas-handle' into next
Karl Rupp
CUDA: Fix includes for PetscCUBLASGetHandle() Extern visibility was not ensured with the previous move of the PetscCUBLASGetHandle() declaration to the public header.
BarryFSmith
Merge branch 'pr862/dkokron/IntelIntrinsicsForBAIJ9by9MDotMaxpy/maint' into next
BarryFSmith
update #define conditions used to turn on Intel intrinsics Commit-type: portability-fix, style-fix
Hong Zhang
Merge branch 'shri/dmnetwork-subnetworks-rebased' into next
Hong Zhang
fix network/water/waterreaddata.c for quad build
BarryFSmith
Merge branch 'barry/fix-bin-install' into next
BarryFSmith
Merge branch 'shri/dmnetwork-subnetworks-rebased' into next
BarryFSmith
Build requires !complex, not running of program Commit-type: bug-fix, portability-fix
Karl Rupp
Merge branch 'jose/cuda-tests' into next
BarryFSmith
Merge branch 'barry/fix-ts-view-push-tab' into next
BarryFSmith
Fixes for TSView to add proper tabbing 1) add PetscViewerASCIIPushTab() PetscViewerASCIIPopTab() for SNESView inside TSView() 2) make sure usessnes is properly set and unset depending on if the TS method uses SNES 3) fix output for two TS examples that do not use SNES Commit-type: bug-fix Reported-by: Alp Dener <adener@anl.gov> Thanks-to: Todd Munson <tmunson@mcs.anl.gov>
Jed Brown
Merge branch 'pefarrell/pccomposite-increment-tab-level' into next * pefarrell/pccomposite-increment-tab-level: PCComposite: increment tab level for sub PCs
BarryFSmith
Merge branch 'shri/dmnetwork-subnetworks-rebased' into next
BarryFSmith
Fix warnings regarding not checking results of fgets() Commit-type: testing-fix,style-fix
Jed Brown
PCComposite: increment tab level for sub PCs Thanks-to: Patrick Farrell <patrick.farrell@maths.ox.ac.uk>
Satish Balay
Merge branch 'hzhang/vec_node/master-rebased-v2' into next
Satish Balay
test: fix warning [similar to prior ex134 fix]
BarryFSmith
Merge branch 'pr862/dkokron/IntelIntrinsicsForBAIJ9by9MDotMaxpy/maint' into next
BarryFSmith
patches to get it to work with gcc and clang and any non-intel compiler Commit-type: bug-fix, portability-fix
Hong Zhang
fix remaining build warning
Hong Zhang
fix warnings reported from regression tests
BarryFSmith
Merge branch 'barry/remove-mdiag-baij' into next
BarryFSmith
Remove unused mdiag[] array from BAIJ that was filled but never used Commit-type: style-fix Reported-by: Xiangdong <epscodes@gmail.com>
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'pr862/dkokron/IntelIntrinsicsForBAIJ9by9MDotMaxpy/maint' into next
Daniel Kokron
Added case specific intrinsic kernels for VecMdot_Seq, VecMAXPY_Seq, and BAIJ bocksize 9 by 9
Hong Zhang
Merge branch 'shri/dmnetwork-subnetworks-rebased' into next
Hong Zhang
fix warnings reported from regression tests
Hong Zhang
fix build warnings
Hong Zhang
bugfix for '--with-mpi=0'
Satish Balay
Merge branch 'shri/dmnetwork-subnetworks-rebased' into next
Hong Zhang
bugfix for initializing UserCtx
Hong Zhang
fix warnings sent by Satish
Satish Balay
Merge branch 'master' into next
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSP ex42: don't run the test in single precision
Stefano Zampini
PC: added logical check on coordinates dimension in PCSetCoordinates()
Stefano Zampini
MATIS: check if the mappings are the equivalent for square matrices DOLFIN passes two different objects as l2g maps
Stefano Zampini
PCBDDC: compress constraint matrix
Stefano Zampini
PCBDDC: added initial support for adaptive coarse space for symmetric indefinite problems
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSP ex42: adding jumping coefficients test case
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
PCBDDC: fix constraints tolerance
Stefano Zampini
PCBDDC: fix documentation
Satish Balay
network/ex1: set the correct localrunfiles to stage
Satish Balay
tests: fix for multiple 'localrunfiles'. i.e support: localrunfiles: ex1options power/case9.m water/sample1.inp
Hong Zhang
rename pflow -> power
Hong Zhang
rename waternet -> water
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
PCBDDC: fix tolerances in when importing near null space constraints
Stefano Zampini
PCBDDC: use l2g info instead of edges and faces
Stefano Zampini
KSP ex70: stupid me
Stefano Zampini
Mat: relax the erroring condition if a matrix is hermitian and symmetric then the imaginary part is zero
Stefano Zampini
PETSCVIEWERGLVIS: fix documentation
Stefano Zampini
KSP ex43: added jumping coefficients test case
Stefano Zampini
PCBDDCSUBSCHURS: add symmetric option
Stefano Zampini
KSP ex43: added glvis option to visualize coefficients and solution
Karl Rupp
Merge branch 'karlrupp/fix-public-access-cublas-handle' into next
Satish Balay
Merge branch 'master' into next
Hong Zhang
update examples to new test models
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
PETSCVIEWERGLVIS: Fix defaults for constructor DMDA defaults to left-looking, that matches the layout obtained from DMDAGetElements
Stefano Zampini
KSP ex70: BDDC should be constructed on the original operator
Stefano Zampini
KSP ex43: add BDDC test
BarryFSmith
Merge branch 'next' of bitbucket.org:petsc/petsc into next
BarryFSmith
Merge branch 'barry/refactor-matshell' into next
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSP ex42: with BDDC, should use the original operator
Stefano Zampini
ISSTRIDE: fix bug in ISView for MATLAB format
Stefano Zampini
PCBDDC: fix complex
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSP ex42: always use MATSOLVERPETSC for testing
Stefano Zampini
PCBDDC: move option customation of SubSchurs to initialization allow matsolverpetsc at command line (mostly for testing purposes)
Stefano Zampini
KSP ex42: added test for new symmetric factorizations
Stefano Zampini
MATSEQDENSE: extend support for MatTransposeSolve fix POTR case, add HETR Added test
Stefano Zampini
PCBDDC: begin adding explicit support for symmetric indefinite
Stefano Zampini
PCBDDC: use LDL^t if sub_schurs are hermitian
Stefano Zampini
KSP ex71: yet another output file to be updated
Stefano Zampini
Merge remote-tracking branch 'origin/maint' into stefano_zampini/fix-matis-dmda-l2g
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSP ex42: reduce sizes 2 SVDs each 600x600 took more than an hour??????
BarryFSmith
Merge branch 'next' of bitbucket.org:petsc/petsc into next
BarryFSmith
Merge branch 'barry/refactor-matshell' into next
Stefano Zampini
Merge remote-tracking branch 'origin/master' into next
BarryFSmith
Merge branch 'next' of bitbucket.org:petsc/petsc into next
BarryFSmith
Merge branch 'master' into next
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSP ex71: fix output files with new monolithic code
Stefano Zampini
KSP ex71: wrong assignment with complexes
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
SNES ex69: no need for Dirichlet solver with the lumped preconditioner
Stefano Zampini
KSP ex70: added FETIDP tests
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSP ex49: use new API from DMDA for elements. Added BDDC and FETI-DP tests
Stefano Zampini
MATIS: implement basic block sizes propagation with MatCreateSubMatrix
Stefano Zampini
PCBDDC: get block size as vertex_size if monolithic has been requested this is for elasticity to work
BarryFSmith
Merge branch 'barry/feature-mg-post-smooth' into next
Hong Zhang
update tests; small fix for complex build
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
Fix issues reported by nightly builds I really don't know why the testing bddc code was included in the commit
BarryFSmith
Merge branch 'barry/refactor-matshell' into next
BarryFSmith
another complex number comparison to 0 Commit-type: bug-fix Reported-by: nightly tests
BarryFSmith
Merge branch 'barry/refactor-matshell' into next
BarryFSmith
fix complex problem Commit-type: bug-fix Reported-by: nightly tests
BarryFSmith
Merge branch 'barry/refactor-matshell' into next
BarryFSmith
Error checking and minor additional functional for MatAXPY() case for MATSHELL Commit-type: feature
BarryFSmith
Merge branch 'next' of bitbucket.org:petsc/petsc into next
BarryFSmith
Merge branch 'barry/refactor-matshell' into next
BarryFSmith
Set incorrect pointer for provided function Commit-type: bug-fix Reported-by: Stefano Zampini <stefano.zampini@gmail.com>
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSPFETIDP: remove ugli command line option for nonzero pressure This can be detected on the submatrix, which is cheap to be obtained being of MATIS format
Stefano Zampini
KSP ex43: add unsymmetric test to FETI-DP
Stefano Zampini
Merge remote-tracking branch 'origin/maint' into stefano_zampini/fix-matis-dmda-l2g
Satish Balay
Merge branch 'master' into next
BarryFSmith
Merge branch 'barry/refactor-matshell' into next
BarryFSmith
Refactorization of MATSHELL now supports matrix free version of ts ex50.c which uses composition of matrix free matrices. Commit-type: feature
Hong Zhang
VecScatter: reorganization implement several vecnode routines rm mpi3 from _p_VecScatter struct -- nolonger useful rm using native shared memory from src/ksp/ksp/examples/tests/ex56.c fix memory bug in VecScatterCreateLocal_PtoS_MPI3() bugfix for VecScatterCopy() -- copy scattertype add flg is_duplicate to _p_VecScatter; use it to prevent using StoP in VecScatterEndMPI3Node() rename VecScatterCre…
Satish Balay
Merge branch 'balay/update-superlu_dist-5.3.0' into next
Satish Balay
Merge branch 'barry/feature-mg-post-smooth' into next
BarryFSmith
Begin refactorization of MatShell to make the code more straightforward and extensible Introduce MatSetOperation() for changing operations on non-MATSHELLs Introduce two modes for MATSHELL 1) MATSHELL manages scalings and shifts automatically 2) Creator of MATSHELL can provide their own code for managing scaling and shifts This is used by MatCreateADA() and MatCreateSubMatrixFree() The extensibility is so that a MatShell can be easily used in as many places as possible…
Hong Zhang
trivial cleanup
Hong Zhang
rm old DMNetworkLayoutSetUp()
Hong Zhang
mv ex3.c ->ex1.c; rm ex2.c; update makefile
Hong Zhang
trivial cleanup and update ex3.c
Hong Zhang
cleanup SetInitialValues() for pf.c and waternet.c
Hong Zhang
mv SetInitialGuess_xxx() from ex3.c to subdirectories
Hong Zhang
change API of DMNetworkSetEdgeList() to DMNetworkSetEdgeList(DM dm,int *edgelist[],int *edgelistCouple[])
Hong Zhang
replace DMNetworkSetSizes() with DMNetworkSetSizesCoupled()
Hong Zhang
cleanup
Hong Zhang
cleanup
Hong Zhang
test different coupling values
Hong Zhang
use coupling model suggested by Shri
Hong Zhang
implement DMNetworkSetSizesCoupled()
Hong Zhang
mv FormFunction_Power() -> pflow/pffunctions.c
Hong Zhang
add struct AppCtx_Water
Hong Zhang
add coupling -- works, but not sure if it is correct
Hong Zhang
save componentkey[] into userctx
Hong Zhang
mv FormJacobian_Power_private() -> pflow/pffunctions.c
Hong Zhang
rm unused variables
Hong Zhang
mv FormFunction_Water() from ex3.c -> waternet/waterfunctions.c
Hong Zhang
add tests for waternet.c
Hong Zhang
cleanup
Hong Zhang
bugfix and cleanup
Hong Zhang
add Xold; modify FormFunction_Dummy(); the final while-loop is not correct in parallel yet
Hong Zhang
bugfix for coupled_snes
Hong Zhang
for power subnetwork, use user-provide Jacobian
Hong Zhang
parallel FormJacobian_subPower() works now
Hong Zhang
add FormJacobian_Power() -- sequential is correct
Hong Zhang
mv FormJacobian -> FormJacobian_Power
Hong Zhang
two snes's work now
Hong Zhang
prepare for subsnes
Hong Zhang
access coupling vertices
Hong Zhang
display needed info
Hong Zhang
bugfix: ex3.c works now
Hong Zhang
add coupling vertices
Hong Zhang
update GetListofEdges_XXX() to enable viewing network info
Hong Zhang
cleanup for reuse some subroutines
Hong Zhang
rename XXXDATA -> XXX_Power
Hong Zhang
add ex1options
Hong Zhang
small fix
Hong Zhang
reduce code duplication for waternet
Hong Zhang
code cleanup
Hong Zhang
ex1 works now
Hong Zhang
small cleanup
Hong Zhang
add src/snes/examples/tutorials/network/ex1.c for implementing coupled networks -- not done yet
Hong Zhang
rename VERTEXDATA -> VERTEX_Water; EDGEDATA -> EDGE_Water
Hong Zhang
mv pflow/ex1.c -> ex2.c;
Hong Zhang
fix mem leak; trivial style cleanup
Shrirang Abhyankar
DMNetwork: Set a limit on the maximum number of components registered.
Shrirang Abhyankar
DMNetwork: Added DMNetworkGetComponent to get the component data directly. The component data used to be accessed by obtaining the component data array first through DMNetworkGetComponentDataArray and then by getting the offset for a given point via DMNetworkGetComponentKeyOffset. Added a new function DMNetworkGetComponent through which the component data can be accessed directly without having to expose the component data array or the offset.
Shrirang Abhyankar
dmnetwork-waternetwork: Example works in parallel now.
Shrirang Abhyankar
dmentwork-waternetwork: The steady-state water network example works in serial now.
Shrirang Abhyankar
DMNetwork-waternetwork-example: Added input and solver options file
Shrirang Abhyankar
DMNetwork: Steady-state water network example (still in progress)
Hong Zhang
cleanup ex1.c
Hong Zhang
small update ex1.c
Hong Zhang
bugfix and update for DMCreateMatrix_Network()
Hong Zhang
enable user Jacobian elements -- wash network only -- parallel does not work yet
Hong Zhang
add View(Jac, )
Hong Zhang
small cleanup and update
Hong Zhang
ex1.c works in sequential and parallel now
Hong Zhang
add SetInitialValues_Wash()
Hong Zhang
add ex1.c: start replacing subnetwork2 in pf2.c with water pipe network
Shrirang Abhyankar
DMNetwork: The subnetwork example works in parallel now. Modified DMNetworkDistribute() to set up the vertices and edges for each subnetwork after the partitioning is done.
Shrirang Abhyankar
DMNetwork: Updated pf2 example to incorporate subnetworks in initial guess, residual, and jacobian evaluation.
Shrirang Abhyankar
DMNetwork: Add vertex and edge information in subnetwork Each subnetwork stores a list of its vertices and edges. Note that these are just integer numbers that are based off the numbering provided by Plex. Added API function DMNetworkGetSubnetworkInfo to retrieve the subnetwork info.
Shrirang Abhyankar
DMNetwork: Duplicate of pf.c that works with subnetworks (coded only till DMNetworkLayoutSetUp)
Shrirang Abhyankar
DMNetwork: Feature subnetwork. Added data structure to hold information about the subnetworks. Modified API (DMNetworkSetSizes, DMNetworkSetEdgeList) to include subnetwork information. Modified DMNetworkLayoutSetUp() to work with subnetwork information. Added subnetwork id in ComponentHeader.
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'master' into next
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSP ex42 and ex43: use new public API to inquire for elements Added BDDC and FETIDP tests
Stefano Zampini
KSPFETIDP: try to infer field decomposition from the DM
Stefano Zampini
PCSVD: fix bug for PCApplyTranspose
Stefano Zampini
PCBDDC: added some more data to the matlab file
Stefano Zampini
IS: added MATLAB format to ISView_{General|Stride|Block}
Stefano Zampini
PCBDDC: use private function for inverting the factors instead of calling MatMatSolve
Stefano Zampini
PCBDDC: need to zero all columns and rows related to dirichlet dofs
Stefano Zampini
KSP ex71: Added periodicity
Stefano Zampini
DMDA: add API to retrive subdomain lower-left corner and element size
BarryFSmith
xMerge branch 'master' into next
BarryFSmith
Merge branch 'barry/feature-ts-burgers-spectral' into next
Satish Balay
Merge branch 'balay/update-superlu_dist-5.3.0' into next
Satish Balay
Merge branch 'barry/scalable-assembly' into next
Stefano Zampini
Merge branch 'stefano_zampini/fix-matis-dmda-l2g' into next
Stefano Zampini
KSP ex71: added Elasticity example ex71 now works in 1,2,and 3d, for Poisson and Elasticity Added few tests
Stefano Zampini
Fix documentation
Stefano Zampini
PCBDDC: add basic subdomain corner detection for DMDA
Stefano Zampini
DMDA: add subdomain corners detection to DMDAGetElements Added API to access corners index set
Stefano Zampini
DMDA: fixes for block size > 1 for MATIS creation
Stefano Zampini
MatIS: should call MatSetValuesBlocked on the local matrix
Satish Balay
Merge branch 'scott/test-harness-timing' into next
Scott Kruger
Merge remote-tracking branch 'origin/scott/test-harness-timing' into next
Jed Brown
Merge branch 'jed/fix-fortran-circular-deps' into next * jed/fix-fortran-circular-deps: Cleanup Fortran circular dependencies produced by gfortran
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'barry/scalable-assembly' into next
BarryFSmith
Merge branch 'master' into next
Satish Balay
Merge branch 'barry/cleanup-nightly-test-tools' into next
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'barry/scalable-assembly' into next
BarryFSmith
Merge branch 'barry/feature-ts-burgers-spectral' into next
BarryFSmith
Merge branch 'master' into next
Hong Zhang
Merge branch 'hzhang/mumps-invA' into next
BarryFSmith
Merge branch 'barry/scalable-assembly' into next
Stefano Zampini
Merge branch 'stefano_zampini/feature-dmda-matis' into next
BarryFSmith
Merge branch 'next' of bitbucket.org:petsc/petsc into next
BarryFSmith
Merge branch 'barry/feature-ts-burgers-spectral' into next
Hong Zhang
Merge branch 'hzhang/mumps-invA' into next
BarryFSmith
Merge branch 'barry/scalable-assembly' into next
Karl Rupp
Merge branch 'karlrupp/feature-lazy-cublas-init' into next
BarryFSmith
Merge branch 'master' into next
BarryFSmith
Merge branch 'master' into next
Stefano Zampini
Merge branch 'stefano_zampini/add-fetidp-example-ex69' into next
Hong Zhang
Merge branch 'hzhang/mumps-invA' into next
BarryFSmith
Merge branch 'barry/show-load-balance/maint' into next
BarryFSmith
Merge branch 'barry/download-libmesh' into next
BarryFSmith
Merge branch 'next' of bitbucket.org:petsc/petsc into next
Hong Zhang
Merge branch 'hzhang/mumps-invA' into next
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