Bash Commands Missing on PhoSim Install

To Who it May Concern,

So I've been attempting to install PhoSim 3.4.2 from this repository via the documentation provided at: https://confluence.lsstcorp.org/display/LSWUG/Installing+PhoSim

So I have two packages set up and the four dependency files located with full addresses. When I run $ ./configure, I get the following results:

-------------------------------
Welcome to the Photon Simulator
-------------------------------

uname: Command not found.
Operating system: 
pwd: Command not found.
local: /usr/local /usr
grep: Command not found.


The photon simulator requires the installation of cfitsio and fftw3.
Would you like to have this script: (a) install these from source, (b) look for existing installations, or (c) specify the paths by hand? c
rm: Command not found.
Please enter the path to libcfitsio.a: /home/jglaser/lsst/Linux64/cfitsio/3360.lsst1/lib/libcfitsio.a
grep: Command not found.
sed: Command not found.
tail: Command not found.
awk: Command not found.
Please enter the path to fitsio.h: /home/jglaser/lsst/Linux64/cfitsio/3360.lsst1/include/fitsio.h
grep: Command not found.
sed: Command not found.
tail: Command not found.
awk: Command not found.
Please enter the path to libfftw3.a: /home/jglaser/lsst/Linux64/fftw/3.3.3/lib/libfftw3.a
grep: Command not found.
sed: Command not found.
tail: Command not found.
awk: Command not found.
Please enter the path to fftw3.h: /home/jglaser/lsst/Linux64/fftw/3.3.3/include/fftw3.h
grep: Command not found.
sed: Command not found.
tail: Command not found.
awk: Command not found.

The photon simulator is now configured.

Type "make" to complete the installation.

My $PATH variable after loadLSST.bash and the setup commands are run, is as follows:

bash:/home/jglaser/lsst/Linux64/lsst/10.0/bin:/home/jglaser/lsst/Linux64/doxygen/1.8.5/bin:/home/jglaser/lsst/Linux64/scons/2.3.0+1/bin:/home/jglaser/lsst/Linux64/sconsUtils/10.0/bin:/home/jglaser/lsst/Linux64/fftw/3.3.3/bin:/home/jglaser/lsst/Linux64/anaconda/2.1.0/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/intel/mic/bin:/home/jglaser/bin:/home/jglaser/lsst/eups/bin: No such file or directory

For clarification, I am using GNU bash, version 4.1.2(1)-release (x86_64-redhat-linux-gnu).

Let me know if you guys have seen this error before or have an idea on how to correct it. Thanks in advance!

Warm Regards,

Joseph Glaser, Drexel University

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