Export does not work - 2019

[Filipe Matteoli]

Older version does not open in Ubuntu 18.04. This new release (2019) works, however when trying to export data (which I assume is in camera icon) fails with:

java.lang.IllegalArgumentException: org.freehep.graphicsbase.util.export.ExportFileType is not an ImageIO SPI class
at java.desktop/javax.imageio.spi.ServiceRegistry.checkClassAllowed(ServiceRegistry.java:722)
at java.desktop/javax.imageio.spi.ServiceRegistry.<init>(ServiceRegistry.java:117)
at org.freehep.graphicsbase.util.export.ExportFileTypeRegistry.<init>(ExportFileTypeRegistry.java:33)
at org.freehep.graphicsbase.util.export.ExportFileTypeRegistry.getDefaultInstance(ExportFileTypeRegistry.java:44)
at org.freehep.graphicsbase.util.export.ExportFileType.getExportFileTypes(ExportFileType.java:180)
at org.freehep.graphicsbase.util.export.ExportFileType.getExportFileTypes(ExportFileType.java:172)
at org.freehep.graphicsbase.util.export.ExportDialog.addAllExportFileTypes(ExportDialog.java:64)
at org.freehep.graphicsbase.util.export.ExportDialog.<init>(ExportDialog.java:130)
at org.freehep.graphicsbase.util.export.ExportDialog.<init>(ExportDialog.java:90)
at org.freehep.graphicsbase.util.export.ExportDialog.<init>(ExportDialog.java:82)
at net.phyloviz.upgmanjcore.visualization.GTExportDialog.<init>(GTExportDialog.java:54)
at net.phyloviz.upgmanjcore.visualization.actions.ExportAction.actionPerformed(ExportAction.java:65)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6632)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3342)
at java.desktop/java.awt.Component.processEvent(Component.java:6397)
at java.desktop/java.awt.Container.processEvent(Container.java:2263)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5008)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4918)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4547)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4488)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2307)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2772)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:743)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
at org.netbeans.core.TimableEventQueue.dispatchEvent(TimableEventQueue.java:136)
[catch] at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)

Don’t know if is helpful but at start warnings are issued:

Using the 'memory' GSettings backend. Your settings will not be saved or shared with other applications.
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by org.netbeans.ProxyURLStreamHandlerFactory (file:s/phyloviz-2.0a/phyloviz/platform/lib/boot.jar) to field java.net.URL.handler
WARNING: Please consider reporting this to the maintainers of org.netbeans.ProxyURLStreamHandlerFactory
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release

Any ideas?

[Bitbucket user]

Sorry for the delay. That problem is related with FreeHEP library versus Java 9 (and later). While FreeHEP is not updated, we can solve that issue by running PHYLOViZ with Java 8, available at https://www.oracle.com/java/technologies/javase-jre8-downloads.html. After downloading and unzipping the archive, just add the path in file phyloviz.conf (at etc directory under PHYLOViZ installation) by changing the variable jdkhome. If we unzip Java 8 at /opt/java/jre1.8.0_281, then we should add in phyloviz-conf:

jdkhome="/opt/java/jre1.8.0_281/"

Thanks.

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