1. pombredanne
  2. biostuff

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Brent Pedersen  committed f75906f

update docstring about where to get the scoring matrices

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File nwalign/nwalign/__init__.py

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-"""
+",""
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 nwalign: fast `cython`_  - `Needleman-Wunsch`_ alignment
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 .. _`Needleman-Wunsch`: http://en.wikipedia.org/wiki/Needleman-Wunsch_algorithm 
 .. _`scoring matrix`: http://en.wikipedia.org/wiki/Substitution_matrix
 .. _`cython`: http://cython.org
+.. _`here`: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/source/data/
 
 This module provides a python module and a command-line interface to do global-
 sequence alignment using the `Needleman-Wunsch` algorithm. It uses `cython`_ 
 
 
 the `matrix` is specified as the full path to an `scoring matrix`_ as
-is distributed with the NCBI toolset.
+is distributed with the NCBI toolset or directly `here`_
+via a simple 
 
 Scoring
 -------