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I

IapdImportDialog - Class in net.talvi.puffinplot.window
Lets the user select options for IAPD file import.
IapdImportDialog(Frame) - Constructor for class net.talvi.puffinplot.window.IapdImportDialog
Creates a new IapdImportDialog.
IapdLoader - Class in net.talvi.puffinplot.data.file
Loader for IAPD files.
IapdLoader(File, Map<Object, Object>) - Constructor for class net.talvi.puffinplot.data.file.IapdLoader
Creates a new IapdLoader.
identity(int, int) - Static method in class Jama.Matrix
Generate identity matrix
IdToFileMap - Class in net.talvi.puffinplot
A class to maintain a mapping between identifier strings and directories.
IdToFileMap(Preferences) - Constructor for class net.talvi.puffinplot.IdToFileMap
 
ignoreOnLoading() - Method in class net.talvi.puffinplot.data.Datum
Returns true if this datum should be ignored (thrown away) when loading a data file.
importAms - Variable in class net.talvi.puffinplot.PuffinActions
Opens a file dialog allowing the user to choose an Agico ASC file from which to import AMS data.
importAmsFromAsc(List<File>, boolean) - Method in class net.talvi.puffinplot.data.Suite
Imports AMS data from ASC files in the format produced by Agico's SAFYR and SUSAR programs.
importAmsFromDelimitedFile(List<File>, boolean) - Method in class net.talvi.puffinplot.data.Suite
Imports AMS data from a whitespace-delimited file.
importFromFile(File) - Method in class net.talvi.puffinplot.PuffinPrefs
Imports preferences from a specified file.
importLocations(File) - Method in class net.talvi.puffinplot.data.Suite
Imports site locations from a CSV file.
importLocations - Variable in class net.talvi.puffinplot.PuffinActions
Imports site location data.
importPrefs - Variable in class net.talvi.puffinplot.PuffinActions
Imports user preferences from an XML file.
inc - Variable in class net.talvi.puffinplot.data.ArasonLevi.ArithMean
 
includesEmpty() - Method in class net.talvi.puffinplot.data.Correction
Returns true if this correction includes an empty-slot correction.
includesFormation() - Method in class net.talvi.puffinplot.data.Correction
Returns true if this correction includes a rotation for formation orientation.
includesSample() - Method in class net.talvi.puffinplot.data.Correction
Returns true if this correction includes a rotation for sample orientation.
includesTray() - Method in class net.talvi.puffinplot.data.Correction
Returns true if this correction includes a correction for tray remanence.
index - Variable in enum net.talvi.puffinplot.data.file.OrientationParameters.AzimuthParameter
An index for an azimuthal parameter value (3, 6, 9, or 12), corresponding to an angle on a clock face.
index - Variable in enum net.talvi.puffinplot.data.file.OrientationParameters.DipParameter
An index for a possible orientation parameter value (valid values are 0 and 90).
initialize(PuffinApp) - Static method in class net.talvi.puffinplot.AppleEventHandler
Instantiates a new AppleEventHandler, which will send events to the supplied PuffinApp instance.
interpolateEquatorPoints(List<Vec3>) - Static method in class net.talvi.puffinplot.data.Vec3
Given a list of points, return a list of lists containing the same points plus possible extras.
inverse() - Method in class Jama.Matrix
Matrix inverse or pseudoinverse
invert() - Method in class net.talvi.puffinplot.data.Vec3
Returns the inverse of this vector.
invertMoments() - Method in class net.talvi.puffinplot.data.Sample
Inverts all magnetic moment data.
invertSamples - Variable in class net.talvi.puffinplot.PuffinActions
Inverts every vector in the currently selected samples.
involvesAf() - Method in enum net.talvi.puffinplot.data.TreatType
 
isA95Valid() - Method in interface net.talvi.puffinplot.data.FisherParams
Reports whether the alpha-95 value represents a real number.
isA95Valid() - Method in class net.talvi.puffinplot.data.FisherValues
 
isA95Valid() - Method in class net.talvi.puffinplot.data.GreatCircles
 
isActualMeasurement() - Method in enum net.talvi.puffinplot.data.MeasType
Returns true if this field corresponds to an actual measurement.
isAnchored() - Method in class net.talvi.puffinplot.data.PcaValues
Reports whether the PCA calculation was anchored.
isAxisScaleLocked() - Method in class net.talvi.puffinplot.PuffinPrefs
Reports whether the axis scale is locked across all samples in the current suite.
isCompatibleValue(Object) - Method in class net.talvi.puffinplot.window.PuffinRenderingHints.Key
isContinuous() - Method in enum net.talvi.puffinplot.data.MeasType
Returns true if this field is CONTINUOUS.
isDiscrete() - Method in enum net.talvi.puffinplot.data.MeasType
Returns true if this field is DISCRETE.
isDragPlotMode() - Method in class net.talvi.puffinplot.window.GraphDisplay
Reports whether the plots are currently draggable by the user.
isEmpty() - Method in class net.talvi.puffinplot.data.Site
Reports whether there are any samples in this site.
isEmpty() - Method in class net.talvi.puffinplot.data.Suite
Determines whether this suite is empty.
isEmptyCorrectionActive() - Method in class net.talvi.puffinplot.PuffinApp
Reports whether the empty-slot correction is currently active.
isEmptySlot() - Method in class net.talvi.puffinplot.data.Sample
Reports whether this sample is an empty slot on the measurement tray.
isExcludedFromMenu() - Method in class net.talvi.puffinplot.PuffinAction
Determines whether the Action should be excluded from the normal application menus (on the grounds that it already exists in a special Mac OS X menu and the application is being run on Mac OS X).
isFilenameSet() - Method in class net.talvi.puffinplot.data.Suite
Reports whether a default PuffinPlot file is set for this suite.
isFullRank() - Method in class Jama.QRDecomposition
Is the matrix full rank?
isGroupedBySite() - Method in class net.talvi.puffinplot.plots.SeparateSuiteEaPlot
Reports whether the Fisher means are grouped by site.
isHalfIntReached() - Method in class net.talvi.puffinplot.data.MedianDestructiveField
Reports whether this sample reached half its initial intensity.
isHidden() - Method in class net.talvi.puffinplot.data.Datum
Reports whether this datum should be hidden on plots.
isImportable() - Method in enum net.talvi.puffinplot.data.DatumField
Reports whether this field is importable.
isInPca() - Method in class net.talvi.puffinplot.data.Datum
Reports whether this measurement is used for a PCA fit.
isMagDevAppliedToFormation() - Method in class net.talvi.puffinplot.data.Correction
 
isMagSusOnly() - Method in class net.talvi.puffinplot.data.Datum
Reports whether this datum has magnetic susceptibility but not magnetic moment data.
isNonsingular() - Method in class Jama.LUDecomposition
Is the matrix nonsingular?
isOnCircle() - Method in class net.talvi.puffinplot.data.Datum
Reports whether this measurement is used for a great-circle fit.
isOnOsX() - Method in class net.talvi.puffinplot.PuffinApp
Reports whether this PuffinApp is running on Mac OS X.
isPcaAnchored() - Method in class net.talvi.puffinplot.data.Datum
Reports whether PCA fits for this point should be anchored.
isPcaAnchored() - Method in class net.talvi.puffinplot.data.Sample
Reports whether principal component analysis should be anchored for this sample
isPcaAnchored() - Method in class net.talvi.puffinplot.PuffinPrefs
Reports whether PCA fits should be anchored to the origin.
isSaved() - Method in class net.talvi.puffinplot.data.Suite
 
isSelected() - Method in class net.talvi.puffinplot.data.Datum
Reports whether this datum is selected.
isSelectionContiguous() - Method in class net.talvi.puffinplot.data.Sample
Returns true if the selected points are contiguous.
isSPD() - Method in class Jama.CholeskyDecomposition
Is the matrix symmetric and positive definite?
isValid() - Method in class net.talvi.puffinplot.data.GreatCircles
Returns true if this great-circle fit is valid.
isVirtual() - Method in enum net.talvi.puffinplot.data.DatumField
Reports whether this field is virtual.
isVisible() - Method in class net.talvi.puffinplot.plots.Plot
Reports whether this plot is visible.
isWellFormed() - Method in class net.talvi.puffinplot.data.Vec3
Checks that this vector contains no NaN or infinite values.
itemStateChanged(ItemEvent) - Method in class net.talvi.puffinplot.window.ControlPanel
Handles changes in the state of user interface components.
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