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R

radius - Variable in class net.talvi.puffinplot.plots.EqAreaPlot
The radius of the projection.
random(int, int) - Static method in class Jama.Matrix
Generate matrix with random elements
rank() - Method in class Jama.Matrix
Matrix rank
rank() - Method in class Jama.SingularValueDecomposition
Effective numerical matrix rank
read(BufferedReader) - Static method in class Jama.Matrix
Read a matrix from a stream.
read(String) - Static method in enum net.talvi.puffinplot.data.file.OrientationParameters.AzimuthParameter
Parses a string as an integer and return an azimuth parameter with the corresponding index.
read(int) - Static method in enum net.talvi.puffinplot.data.file.OrientationParameters.AzimuthParameter
Returns an azimuth parameter for a specified index.
read(String) - Static method in enum net.talvi.puffinplot.data.file.OrientationParameters.DipParameter
Parses a string as an integer and return a dip parameter with the corresponding index.
read(int) - Static method in enum net.talvi.puffinplot.data.file.OrientationParameters.DipParameter
Returns a dip parameter for a specified index.
read(int, int, int, int) - Static method in class net.talvi.puffinplot.data.file.OrientationParameters
Creates a orientation parameter set from the specified index values for the required parameters.
read(String, String, String, String) - Static method in class net.talvi.puffinplot.data.file.OrientationParameters
Creates a orientation parameter set from the strings containing index values for the required parameters.
readDirectionalData(Collection<File>) - Method in class net.talvi.puffinplot.data.Suite
Reads sample direction data from text files.
Reader(List<String>) - Constructor for class net.talvi.puffinplot.data.Datum.Reader
Create a new reader using the supplied header strings.
readFile() - Method in class net.talvi.puffinplot.data.file.AmsLoader
Reads the file for which this loader was created.
readFile(File, Map<Object, Object>) - Static method in class net.talvi.puffinplot.data.file.Jr6Loader
 
readFile(File, Map<Object, Object>) - Static method in class net.talvi.puffinplot.data.file.PmdLoader
 
readFiles(List<File>) - Method in class net.talvi.puffinplot.data.Suite
Convenience method for reading PuffinPlot files.
readFiles(List<File>, SensorLengths, TwoGeeLoader.Protocol, boolean, FileType, FileFormat, Map<Object, Object>) - Method in class net.talvi.puffinplot.data.Suite
Reads data into this suite from the specified files.
readFromPrefs(Preferences) - Static method in class net.talvi.puffinplot.data.file.FileFormat
Creates a format from a preferences object.
readLine(String) - Method in class net.talvi.puffinplot.data.file.FileFormat
Creates a Datum from a line formatted according to this format.
readLines(List<String>) - Method in class net.talvi.puffinplot.data.file.FileFormat
Reds a list of lines in this format and produces the corresponding Datums.
RecentFileList - Class in net.talvi.puffinplot
RecentFileList manages a list of file-sets.
RecentFileList(Preferences) - Constructor for class net.talvi.puffinplot.RecentFileList
Creates a new file list, reading data (if any) from the supplied Preferences object.
recreatePlots() - Method in class net.talvi.puffinplot.window.MainGraphDisplay
Deletes all plots and recreates them.
redoCalculations() - Method in class net.talvi.puffinplot.PuffinApp
Recalculates all sample and site calculations in all currently open suites; intended to be called when the correction (none/sample/formation) has changed.
remove(int) - Method in class net.talvi.puffinplot.data.CustomFields
Removes a value from this custom field list.
remove(Object) - Method in class net.talvi.puffinplot.window.PuffinRenderingHints
removeCurrentDatumListener(CurrentDatumListener) - Method in class net.talvi.puffinplot.window.GraphDisplay
 
removeSampleClickListener(SampleClickListener) - Method in class net.talvi.puffinplot.plots.Plot
Removes a sample click listener which was previously added to this plot.
removeSamplesOutsideDepthRange(double, double) - Method in class net.talvi.puffinplot.data.Suite
Retains the samples between the specified depths in the suite, and removes all samples outside this range.
removeSavedListener(Suite.SavedListener) - Method in class net.talvi.puffinplot.data.Suite
Remove a listener for the Suite's save state
rescaleMagSus(double) - Method in class net.talvi.puffinplot.data.Suite
Multiplies all magnetic susceptibility measurements in this suite by the specified factor.
rescaleMagSus - Variable in class net.talvi.puffinplot.PuffinActions
Scales all magnetic susceptibility values in the current suite by a user-specified factor.
rescaleMagSus() - Method in class net.talvi.puffinplot.PuffinApp
Scales all magnetic susceptibility values in the current suite by a user-specified factor.
resetLayout - Variable in class net.talvi.puffinplot.PuffinActions
Resets the layout of the plots to the default.
resetLayout() - Method in class net.talvi.puffinplot.window.GraphDisplay
Resets each plot's size and position to their defaults.
rot180(MeasurementAxis) - Method in class net.talvi.puffinplot.data.Datum
Rotates magnetic moment data 180 degrees about the specified axis.
rot180(MeasurementAxis) - Method in class net.talvi.puffinplot.data.Vec3
Rotates the vector by 180 degrees about the specified axis.
rotY(double) - Method in class net.talvi.puffinplot.data.Vec3
Rotates this vector about the y axis.
rotZ(double) - Method in class net.talvi.puffinplot.data.Vec3
Rotates this vector about the z axis.
runJavascriptScript - Variable in class net.talvi.puffinplot.PuffinActions
Runs a Python script using the Jython interpreter.
runJavascriptScript(String) - Method in class net.talvi.puffinplot.PuffinApp
 
runPythonScript - Variable in class net.talvi.puffinplot.PuffinActions
Runs a Python script using the Jython interpreter.
runPythonScriptInGui(String) - Method in class net.talvi.puffinplot.PuffinApp
Runs a specified Python script, first downloading Jython if required.
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