public class CaltechLoader
extends java.lang.Object
Modifier and Type | Field and Description |
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protected java.util.List<java.lang.String> |
messages |
protected java.util.List<TreatmentStep> |
treatmentSteps |
Constructor and Description |
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CaltechLoader(java.io.File file)
Creates a new CIT loader to read a specified file.
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Modifier and Type | Method and Description |
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protected void |
addMessage(java.lang.String message,
java.lang.Object... args) |
protected void |
addTreatmentStep(TreatmentStep step) |
java.util.List<java.lang.String> |
getExtraLines()
Returns any lines in the file which were not handled by the loader.
|
java.util.List<java.lang.String> |
getMessages()
Returns any messages produced during the loading process.
|
java.util.List<TreatmentStep> |
getTreatmentSteps()
Returns the treatment steps read from the file.
|
protected java.util.List<java.lang.String> messages
protected java.util.List<TreatmentStep> treatmentSteps
public CaltechLoader(java.io.File file)
file
- the .sam file to readprotected void addMessage(java.lang.String message, java.lang.Object... args)
protected void addTreatmentStep(TreatmentStep step)
public java.util.List<TreatmentStep> getTreatmentSteps()
FileLoader
getTreatmentSteps
in interface FileLoader
public java.util.List<java.lang.String> getExtraLines()
FileLoader
getExtraLines
in interface FileLoader
public java.util.List<java.lang.String> getMessages()
FileLoader
getMessages
in interface FileLoader