Snippets

Peter Sudmant managing genome annotations and references

Created by Peter Sudmant last modified
genome_annots
Raw 
 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
##############################################
##annotations and in some cases genome fastas
##############################################
/genomes
  /ucsc
    /ucsc
      /{species}
        /{release}
          /database/
          /fasta
            /{release}.fa
            /{release}.fa.fai
            /ENSEMBL_to_UCSC.contigs
            /UCSC_to_ENSEMBL.contigs
          /liftover
          /phyloP60way
          /...
  /ensembl
    /{release}
      /gtf
        /{species}
          /{species_ensembl_version}.gtf.gz
          /UCSC
            /{ucsc_version}.gtf
            /{ucsc_version}.gff
      /gtf.index
##############################################
##indexes, based on annotation (note, not GTFs
##############################################
/indexes
  /ucsc
  /ensembl

Comments (0)

HTTPS SSH

You can clone a snippet to your computer for local editing. Learn more.