GALAXY ====== http://galaxyproject.org/ The latest information about Galaxy is always available via the Galaxy website above. HOW TO START ============ Galaxy requires Python 2.5, 2.6 or 2.7. To check your python version, run: % python -V Python 2.4.4 Start Galaxy: % sh run.sh Once Galaxy completes startup, you should be able to view Galaxy in your browser at: http://localhost:8080 You may wish to make changes from the default configuration. This can be done in the universe_wsgi.ini file. Tools are configured in tool_conf.xml. Details on adding tools can be found on the Galaxy website (linked above). Not all dependencies are included for the tools provided in the sample tool_conf.xml. A full list of external dependencies is available at: http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies
f29453f - Added workflow_to_dot.py - create graphviz dot files from Galaxy workflow JSON
a5eaecc - Added sqlite3 datatype, took some tools out of tool_conf (they installed via toolshed now), switched on tasked jobs in universe_wsgi.ini
14e330e - Comment out emboss tools - these are now provided by the built-in toolshed.
9ffef0d - Fixed a problem where the __init__ tests if config.database_connection is None. lib/galaxy/config.py instead sets database_connection to False if it is not defined in universe_wsgi.ini, so ...
b70762b - Updated galaxy config, in the process trashing username mapping config, need to add that back.
95932f4 - Added tool_conf.xml.sample to local repo.
41f3a78 - Added option to download pre-built indexes from galaxy servers.
56c13a7 - Fix Trackster bug when fetching more tile data. Pack script.