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compatibility / biopython


Biopython isn't fully compatible with PyPy. Even though many of its unit tests pass with PyPy 1.6 or a PyPy nightly build, Biopython depends on Numpy (incompatible) for many features, both at the Python level and the numpy C API. Many SQLite-related tests also fail, among others. Biopython's C extensions fail to build with PyPy (and are therefore disabled in Biopython's at the time of writing).

Category:Scientific libraries
Soft Dependencies
MySQL-Python (MySQLdb) Compatible More Information
Numpy Incompatible More Information
Psycopg2 Compatible More Information
pysqlite (sqlite3) Compatible
ReportLab Compatible More Information