Commits

Author Commit Message Labels Comments Date
jeremy goecks
Enable tool search to fail gracefully for Python 2.4 and below.
Daniel Blankenberg
Fix mafcustomtrack set_meta to not fail when missing data.
jeremy goecks
Fix bug that prevented 'All workflows' link from being shown when tool search is active.
Nate Coraor
Bug fixes for the addition of the user column in the job table.
jeremy goecks
Add tool searching functionality using Whoosh and lots of jQuery. Search is currently hidden by default but will soon be a user preference.
Greg Von Kuster
Community webapp cleanup: eliminate all unnecessary grids and methods, keeping existing features and behavior. Remaining grid features are now functionally correct.
Daniel Blankenberg
Bug Fix for extracting a workflow from a history when a tool is not loaded.
Daniel Blankenberg
Bug Fix for double UnvalidatedValue wrapping when extracting a workflow from a history that was created using UnvalidatedValues (e.g. when dynamic options is used in a tool before metadata is ready).
Daniel Blankenberg
Bug Fix for rerun action when a tool is not loaded.
James Taylor
Changes to browse library UI: 1) use standard popup button styles, 2) Move library wide actions out of table header and into manage-table-actions
Daniel Blankenberg
Bug Fix for datasets getting stuck in setting_metadata state when using external metadata and there was a job failure (e.g. cluster error).
Daniel Blankenberg
Fix bug in root.history_item_update caused when a tool has been removed.
jeremy goecks
Fix options bug in cufflinks wrapper.
Daniel Blankenberg
Enhance change datatype action in edit attributes form to set metadata externally when so configured.
Kanwei Li
Len datasets for custom dbkeys now don't need a history and this fixes an issue with extract workflows
guru
Fixed a bug in 'Fetch closest features' tool that prevented fetching of immediately adjacent features.
Greg Von Kuster
Rewrite the jobs report queries to no longer join the job table to the galaxy_session and galaxy_user tables, just join galaxy_user since we now have a direct relation to that table.
Greg Von Kuster
Add colors for all job / tool states to the base stylesheet.
Greg Von Kuster
Add the "all" option to the grid's StateColumn.
Greg Von Kuster
Add the user mapper to the job object.
Kanwei Li
trackster: Supports display of reference sequence in twobit format. Mapping of dbkey to twobit file is done in tool-data/twobit.loc. Reference track will automatically be shown when zoomed in if the twobit file exists for that dbkey. Also fixes a drawing issue with Reference/Read tracks.
Greg Von Kuster
Fixes for db migration script 47: add sql to update the new user_id column in the job table with valid data.
jeremy goecks
Fix grid initialization bug that was preventing visualization grids from working properly.
Daniel Blankenberg
Add missing customtrack display application definition file.
Daniel Blankenberg
Add a VCF to MAF Custom Track converter tool. This tool converts a Variant Call Format (VCF) file into a Multiple Alignment Format (MAF) custom track file suitable for display at genome browsers.
Daniel Blankenberg
Add mafcustomtrack datatype and a UCSC external display application which can be used to view this datatype at UCSC.
fubar: ross Lazarus at gmail period com
revert welcome.html
fubar: ross Lazarus at gmail period com
Patch to upload.py for composite file uploads where the user supplies urls for components
jeremy goecks
Change language and parameter names in GOPS subtract to imply that any interval files can be used as input, not just BED files.
rc
now a regular user can also upload dataset/trigger workflow in the demo script
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