1. Ramkrishna Chakrabarty
  2. galaxy-central-poster

Commits

Author Commit Message Date Builds
Daniel Blankenberg
Add tools contributed by Chungoo Park (cxp440@psu.edu) for Principal Component Analysis, Linear Discriminant Analysis, and drawing Receiver Operating Characteristic plots.
jeremy goecks
Do not use search/select for multi-select inputs and pack scripts.
jeremy goecks
New icon to denote the action 'expand embedded item to full page.'
jeremy goecks
(1) Enable form builder to build select inputs and (2) enable users to create visualizations via a button on the saved visualizations page.
Nate Coraor
Calculating the CRC is costlier than it is useful
Nate Coraor
bugfix for last commit
Nate Coraor
Compute CRC32 for mod_zip - may be time/resource consuming, so committing to test on Galaxy Test
fubar: ross Lazarus at gmail period com
More functional test tweaks - pdf sizes are vastly different on solaris for rgManQQ and rgQC
Kanwei Li
trackster: respect block color for bam
Nate Coraor
Committed mod_zip code from the wrong repo
rc
lims: ui fixes in adding samples
Daniel Blankenberg
Allow FASTQ Groomer/parser to work on tab-delimited decimal scores.
rc
fixed the status message box layout in grid
rc
sff_converter tool functional test
Daniel Blankenberg
Minor cleanup for ensembl display applications and fastq masker tool.
jeremy goecks
Page editor: fix indenting issue for webkit browsers.
Nate Coraor
Added nginx mod_zip support for library downloads
Daniel Blankenberg
First pass at implementing a method for allowing a maximum file size cutoff for setting optional metadata (e.g. line and sequence counts). Currently csFasta, qualsolid, and fastq make use of this option.
Greg Von Kuster
Send the web freamework ( trans ) to the grid's build_initial_query() method rather than the web framework's db session so that the method can take advantage of all of the web freamwork's attributes. Change the library controller to use grids for the data libraries display.
jeremy goecks
In Page editor, prevent extra paragraphs from being inserted with embedded items.
fubar: ross Lazarus at gmail period com
branch merge again?
fubar: ross Lazarus at gmail period com
Branch merge
fubar: ross Lazarus at gmail period com
Require two paths for rgtest.sh galaxyroot and outroot test with a /tmp path for outroot...this script will recreate all the snp/wga test outputs if you ask it to - which may or may not be what you want...
fubar/ross period lazarus at gmail d0t com
Require 2 paths for rgtest.sh This script will overwrite all the snp/wga test outputs if you ask it to
Nate Coraor
merge backout
Nate Coraor
Backed out changeset 48432330228e. pbs_python 2.9.8 is causing the job runner to segfault.
Daniel Blankenberg
Add a tool to mask FASTQ bases according to quality score. Currently replacement by Ns or lowercase is allowed.
jeremy goecks
Another pass on search+select for autocomplete that handles user input much better.
Daniel Blankenberg
First pass at adding Ensembl browsers as an external display application. Two different URL generation and data attachment methods are used; one for 'old' Ensembl archives older than ~November 2008 and another for Ensembl sites using the current method. The tool-data/shared/ensembl/ensembl_sites.txt file contains the site and build information for using the current method; the tool-data/shared/ensembl/ensembl_sites_data_URL.txt file has the site and build information for when the older method is to be used. The new method follows: http://www.ensembl.org/info/docs/webcode/linking.html The old method follows: http://aug2007.archive.ensembl.org/Homo_sapiens/helpview?se=1;kw=urlsource
jeremy goecks
Enable display framework to handle unicode characters in item titles and enable pages to have unicode characters in titles.
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