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Anonymous committed 11f32c7 Merge

Merge

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Files changed (2)

+DATE,Wed Aug 07 10:48:36 2013
+SUBJECT,M5
+EXPERIMENT,D2P2
+TECH,Ryan
+COMMENTS,
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+from collections import deque
+import numpy, math
+
+# List of all the log files needed to be parsed, if they come from a different
+# directory use the absolute path
+FILES = ['M5Long.txt']
+
+# data points
+misses = []
+rejections = []
+
+# metadata
+date = ''
+subject = ''
+experiment = ''
+
+def main():
+    """ 
+    main function of script, mainly responsible for reading in and parsing
+    the file
+    """
+    
+    for file in FILES:
+        # read file line by line        
+        infile = open(file, 'r')
+        q = deque(infile)
+        while q:
+            # split line up by commas            
+            line = q.popleft().strip()
+            values = line.split(',')
+            header = values[0]
+            
+            # if line starts with 'TIME' and has 'STARTTRIAL' then special processing
+            # is req to determine a false positive/negative was made and the amount
+            # of time mouse had head inside
+            if header == 'TIME' and values[6] == 'STARTTRIAL':
+                counter = {
+                    # misses will only occur on trails with (-) stimulus and correct 
+                    # rejections with (+) stimuli
+                    '+': rejections,
+                    '+NR': rejections,
+                    '-': misses
+                }[values[7]]; 
+                parseTrial(q, counter)
+            
+            # extra meta-data for display
+            elif header == 'DATE':
+                date = values[1]
+            elif header == 'SUBJECT':
+                subject = values[1]
+            elif header == 'EXPERIMENT':
+                experiment = values[1]
+        
+        # Display information and Statistics     
+        print('SUBJECT: ' + subject)
+        print('EXPERIMENT: ' + experiment)
+        print('DATE: ' + date)
+        
+        print('\nFalse Negatives (misses)')
+        printStats(misses)
+        
+        print('\nTrue Negatives (correct rejections)')
+        printStats(rejections)
+        
+        print('\nCombined')
+        printStats(misses+rejections)
+        print('----------------------\n')
+    
+def parseTrial(log, counter):
+    """ 
+    list<str> log = the log file parsed into seperated lines
+    list<float> counter = running tally where each new data point will be stored
+    """
+    start = 0
+    end = 0
+    mousestart = False
+    headout = False
+    
+    # iterate through the lis
+    while log:
+        line = log.popleft().strip()
+        values = line.split(',')
+        action = values[6]
+            
+        # Trial will only be counted if the log indicates a MOUSESTART action
+        # followed by a HEADOUT action before TRIALEND
+        if action == 'MOUSESTART':
+            mousestart = True
+            start = float(values[1])
+            
+        elif action == 'HEADOUT' and mousestart:
+            headout = True            
+            end = float(values[1])
+            break
+            
+        elif action == 'TRIALEND':
+            break
+
+    # if a miss or correct rejection was made store time between MOUSESTART and
+    # HEADOUT in the appropiate dataset.
+    if mousestart and headout: 
+        time = end - start
+        counter.append(time)
+        
+
+def printStats(data):
+    print('  mean: ' + str(numpy.mean(data)))
+    print('  median: ' + str(numpy.median(data)))
+    print('  std: ' + str(numpy.std(data)))
+
+    # IQR, wasn't able to find it in numpy    
+    N = len(data)
+    data.sort()
+    q1 = data[math.floor(N*.25)]
+    q3 = data[math.ceil(N*.75)]
+    iqr = q3-q1
+    print('  IQR: ' + str(iqr))
+    print('  raw data: ' + ';'.join(map(str,data)))
+        
+    
+if __name__ == "__main__":
+    main()
+            
+            
+