Commits

Anonymous committed c4027b4

Updated Parser to work with G/Gen trials, take statistics on LICKOUTs/LICKINs, write trial data to the file, and beter display

  • Participants
  • Parent commits 11f32c7

Comments (0)

Files changed (2)

+DATE,Fri Aug 09 12:57:07 2013
+SUBJECT,M6
+EXPERIMENT,PeakShift
+TECH,Ryan
+COMMENTS,
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-from collections import deque
-import numpy, math
+from collections import deque, namedtuple
+import numpy as np, math, pandas
 
 # List of all the log files needed to be parsed, if they come from a different
 # directory use the absolute path
-FILES = ['M5Long.txt']
+FILES = ['M6Long.txt']
 
-# data points
-misses = []
-rejections = []
 
 # metadata
 date = ''
 subject = ''
 experiment = ''
 
+Trial = namedtuple('Trial', ['trial_type', 'lickin_count', 'lickout_time', 'headin_time', 'response'])
+trials = []
+
 def main():
     """ 
     main function of script, mainly responsible for reading in and parsing
     the file
     """
     
+    # parse file and collect information about each trial
     for file in FILES:
-        # read file line by line        
         infile = open(file, 'r')
         q = deque(infile)
+        infile.close()
         while q:
-            # split line up by commas            
+            # read line and split line up by commas            
             line = q.popleft().strip()
+            if len(line) == 0:
+                continue            
             values = line.split(',')
             header = values[0]
             
-            # if line starts with 'TIME' and has 'STARTTRIAL' then special processing
-            # is req to determine a false positive/negative was made and the amount
-            # of time mouse had head inside
+            # look for keyword STARTTRIAL  
             if header == 'TIME' and values[6] == 'STARTTRIAL':
-                counter = {
-                    # misses will only occur on trails with (-) stimulus and correct 
-                    # rejections with (+) stimuli
-                    '+': rejections,
-                    '+NR': rejections,
-                    '-': misses
-                }[values[7]]; 
-                parseTrial(q, counter)
+                parseTrial(q, values[7])
             
             # extra meta-data for display
             elif header == 'DATE':
             elif header == 'EXPERIMENT':
                 experiment = values[1]
         
-        # Display information and Statistics     
+        
+        # categorize trials and gather statistics
+        stats = {}       
+        for t in trials:
+            ttype = t.trial_type
+            if ttype == '+NR': 
+                ttype = '+' # treat +NR trial as + trial
+            if (ttype == '+' or ttype == '-'):
+                resp = t.response