BayesOpt / include / kernelregressor.hpp

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/** \file kernelregressor.hpp 
    \brief Nonparametric process abstract module */
   This file is part of BayesOpt, an efficient C++ library for 
   Bayesian optimization.

   Copyright (C) 2011-2013 Ruben Martinez-Cantin <>
   BayesOpt is free software: you can redistribute it and/or modify it 
   under the terms of the GNU General Public License as published by
   the Free Software Foundation, either version 3 of the License, or
   (at your option) any later version.

   BayesOpt is distributed in the hope that it will be useful, but 
   WITHOUT ANY WARRANTY; without even the implied warranty of
   GNU General Public License for more details.

   You should have received a copy of the GNU General Public License
   along with BayesOpt.  If not, see <>.


#include "cholesky.hpp"
#include "nonparametricprocess.hpp"
#include "kernel_functors.hpp"

namespace bayesopt

  /** \addtogroup NonParametricProcesses 
   *  \brief Set of nonparametric processes (Gaussian process, Student's
   *  t process, etc.) for surrogate modelling

   * \brief Abstract class to implement non-parametric processes
  class KernelRegressor: public NonParametricProcess
    KernelRegressor(size_t dim, bopt_params parameters, const Dataset& data, randEngine& eng);
    virtual ~KernelRegressor();

     * \brief Updates the kernel parameters with a point estimate
     * (empirical Bayes) or a full Bayesian distribution
    virtual void updateKernelParameters() = 0;

     * \brief Computes the initial surrogate model and updates the
     * kernel parameters estimation. 
     * This function requires to recompute all covariance matrixes,
     * inverses, etc.  Use it with precaution.
    void fitSurrogateModel();

     * \brief Sequential update of the surrogate model by adding a new point.
     *  Add new point efficiently using Matrix Decomposition Lemma for the
     *  inversion of the correlation matrix or adding new rows to the
     *  Cholesky decomposition.  If retrain is true, it recomputes the
     *  kernel hyperparameters and computes a full covariance matrix.
    void updateSurrogateModel(const vectord &Xnew, double Ynew, bool retrain);

    // Getters and setters
    double getSignalVariance();

    /** Sets the kind of learning methodology for kernel hyperparameters */
    void setLearnType(learning_type l_type);


    /** Precompute some values of the prediction that do not depends
     * on the query. */
    virtual void precomputePrediction() = 0;

    /** Computes the Correlation (Kernel or Gram) matrix */
    void computeCorrMatrix(matrixd& corrMatrix);

    /** Computes the Correlation (Kernel or Gram) matrix */
    matrixd computeCorrMatrix();

    /** Computes the derivative of the correlation matrix with respect
     *	to the dth hyperparameter */
    matrixd computeDerivativeCorrMatrix(int dth_index);
    vectord computeCrossCorrelation(const vectord &query);
    double computeSelfCorrelation(const vectord& query);

    /** Computes the Cholesky decomposition of the Correlation matrix */
    void computeCholeskyCorrelation();

    matrixd mL;             ///< Cholesky decomposition of the Correlation matrix
    learning_type mLearnType;
    KernelModel mKernel;

    /** Adds a new point to the Cholesky decomposition of the
     * Correlation matrix. */
    void addNewPointToCholesky(const vectord& correlation,
			      double selfcorrelation);

    const double mRegularizer;   ///< Std of the obs. model (also used as nugget)

  //// Inline methods
  inline void KernelRegressor::fitSurrogateModel()

  inline void KernelRegressor::setLearnType(learning_type l_type) 
  { mLearnType = l_type; };

  inline void KernelRegressor::computeCorrMatrix(matrixd& corrMatrix)
  { mKernel.computeCorrMatrix(mData.mX,corrMatrix,mRegularizer); }

  inline  matrixd KernelRegressor::computeCorrMatrix()
    const size_t nSamples = mData.getNSamples();
    matrixd corrMatrix(nSamples,nSamples);
    return corrMatrix;

  inline vectord KernelRegressor::computeCrossCorrelation(const vectord &query)
  { return mKernel.computeCrossCorrelation(mData.mX,query); }

  inline double KernelRegressor::computeSelfCorrelation(const vectord& query)
  { return mKernel.computeSelfCorrelation(query); }

  inline void KernelRegressor::addNewPointToCholesky(const vectord& correlation,
							  double selfcorrelation)
    vectord newK(correlation);
    utils::append(newK, selfcorrelation);

} //namespace bayesopt