RELION_QUEUE_USE, RELION_QUEUE_NAME, and RELION_QSUB_TEMPLATE environment variables don't affect Class2D and Class3D

[Matt I]

Is this by design? It would be helpful if they did.

[Takanori Nakane]

Hi, I cannot reproduce your problem.

Perhaps you have opened RELION in the directory once before setting up the variable. Then RELION remembers the previous job setting and the environmental variable will not override it.

Please try the following.

mkdir /somewhere/test/ # make a new project directory to start from scratch
cd /somewhere/test/
export RELION_QUEUE_NAME=testqueue
export RELION_QSUB_TEMPLATE=/test.sh
relion # this should ask "Do you want to start a new project here [y/n]?"

Does it still not work?

[Matt I]

That's right. It appears to be working properly. I must have already opened relion in that directory.

Thanks!