GUI not passing --gpu flag in autopicker
Dear RELION team,
I've compiled today the latest RELION-3.0beta source and observed that, when trying to use the GPU-enabled autopicker from the GUI, it is not passing the --gpu flag to the run_submit.script file (I'm working on a cluster with SLURM) and the job ends up running on CPUs. When manually adding the --gpu flag to the "Additional arguments" field, the job runs correctly on the GPUs. Is this a bug or am I doing something wrong?
Comments (6)
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- changed status to resolved
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reporter The tutorial for RELION-3 then also needs to be updated (Section 1.5). Thanks!
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Sure. Thank you very much for pointing this out.
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reporter Just to clarify, I now realized that when passing the --gpu flag manually, the job tried to use the GPUs, but crashed.
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Yes, the GPU code path for the LoG picker is not implemented. I will block the combination of
--gpu
and--LoG
by raising an error. - Log in to comment
Hi,
The Laplacian-of-Gaussian picker does not use GPU. I will make this clear in the GUI.
Best regards,
Takanori Nakane