- edited description
bfactor_plot.py produces strange axis
Issue #39
new
NrParticles Ln(NrParticles) Resolution(A) 1/Resolution^2 PostProcessBfactor
500 6.215 3.37 0.0881 28.39
1000 6.908 3.24 0.0954 48.03
2000 7.601 3.04 0.1081 50.53
4000 8.294 2.90 0.1189 65.38
8000 8.987 2.80 0.1274 63.99
16000 9.680 2.71 0.1361 67.83
21971 9.997 2.68 0.1391 70.85
RELION_IT: ESTIMATED B-FACTOR from 7 points is 143.53
RELION_IT: The fitted line is: Resolution = 1 / Sqrt(2 / 143.535 * Log_e(#Particles) + 0.001)
RELION_IT: IF this trend holds, you will get:
RELION_IT: 2.61 A from 32956 particles (150 % of the current number of particles)
RELION_IT: 2.58 A from 43942 particles (200 % of the current number of particles)
RELION_IT: 2.50 A from 87884 particles (400 % of the current number of particles)
RELION_IT: 2.43 A from 175768 particles (800 % of the current number of particles)
/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_pdf.py:1049: UserWarning: 'STIX-Regular.otf' can not be subsetted into a Type 3 font. The entire font will be embedded in the output.
os.path.basename(filename))
RELION_IT: Plot written to BFACTOR_PLOT_rosenthal-henderson-plot.pdf
RELION_IT: exiting now...
This depends on Matplotlib's version?
Installed Packages
python.x86_64 2.7.5-69.el7_5 @updates
python-IPy.noarch 0.75-6.el7 @base
python-augeas.noarch 0.5.0-2.el7 @base
python-backports.x86_64 1.0-8.el7 @base
python-backports-ssl_match_hostname.noarch
3.5.0.1-1.el7 @base
python-blivet.noarch 1:0.61.15.69-1.el7 @base
python-brlapi.x86_64 0.6.0-16.el7 @base
python-cffi.x86_64 1.6.0-5.el7 @base
python-chardet.noarch 2.2.1-1.el7_1 @base
python-configobj.noarch 4.7.2-7.el7 @anaconda
python-configshell.noarch 1:1.1.fb23-4.el7_5 @updates
python-coverage.x86_64 3.6-0.5.b3.el7 @base
python-cups.x86_64 1.9.63-6.el7 @base
python-custodia.noarch 0.3.1-4.el7 @base
python-dateutil.noarch 1.5-7.el7 @base
python-decorator.noarch 3.4.0-3.el7 @anaconda
python-deltarpm.x86_64 3.6-3.el7 @base
python-devel.x86_64 2.7.5-69.el7_5 @updates
python-di.noarch 0.3-2.el7 @base
python-dmidecode.x86_64 3.12.2-2.el7 @base
python-dns.noarch 1.12.0-4.20150617git465785f.el7 @base
python-enum34.noarch 1.0.4-1.el7 @base
python-ethtool.x86_64 0.8-5.el7 @base
python-firewall.noarch 0.4.4.4-14.el7 @base
python-gobject.x86_64 3.22.0-1.el7_4.1 @updates
python-gobject-base.x86_64 3.22.0-1.el7_4.1 @updates
python-gssapi.x86_64 1.2.0-3.el7 @base
python-idna.noarch 2.4-1.el7 @base
python-iniparse.noarch 0.4-9.el7 @anaconda
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python-ipaddress.noarch 1.0.16-2.el7 @base
python-javapackages.noarch 3.4.1-11.el7 @base
python-jwcrypto.noarch 0.4.2-1.el7 @base
python-kerberos.x86_64 1.1-15.el7 @base
python-kitchen.noarch 1.1.1-5.el7 @base
python-kmod.x86_64 0.9-4.el7 @base
python-krbV.x86_64 1.0.90-8.el7 @base
python-ldap.x86_64 2.4.15-2.el7 @base
python-libipa_hbac.x86_64 1.16.0-19.el7_5.5 @updates
python-libs.x86_64 2.7.5-69.el7_5 @updates
python-linux-procfs.noarch 0.4.9-3.el7 @base
python-lxml.x86_64 3.2.1-4.el7 @base
python-matplotlib.x86_64 1.2.0-15.el7 @base
python-matplotlib-doc.x86_64 1.2.0-15.el7 @base
python-meh.noarch 0.25.2-1.el7 @base
python-meh-gui.noarch 0.25.2-1.el7 @base
python-netaddr.noarch 0.7.5-9.el7 @base
python-netifaces.x86_64 0.10.4-3.el7 @base
python-nose.noarch 1.3.7-1.el7 @base
python-nss.x86_64 0.16.0-3.el7 @base
python-ntplib.noarch 0.3.2-1.el7 @base
python-perf.x86_64 3.10.0-862.11.6.el7 @updates
python-ply.noarch 3.4-11.el7 @base
python-pwquality.x86_64 1.2.3-5.el7 @base
python-pyblock.x86_64 0.53-6.el7 @base
python-pycparser.noarch 2.14-1.el7 @base
python-pycurl.x86_64 7.19.0-19.el7 @base
python-pyudev.noarch 0.15-9.el7 @base
python-qrcode-core.noarch 5.0.1-1.el7 @base
python-requests.noarch 2.6.0-1.el7_1 @base
python-rpm-macros.noarch 3-22.el7 @epel
python-rtslib.noarch 2.1.fb63-12.el7_5 @updates
python-schedutils.x86_64 0.4-6.el7 @base
python-setuptools.noarch 0.9.8-7.el7 @base
python-six.noarch 1.9.0-2.el7 @base
python-slip.noarch 0.4.0-4.el7 @base
python-slip-dbus.noarch 0.4.0-4.el7 @base
python-smbc.x86_64 1.0.13-8.el7 @base
python-srpm-macros.noarch 3-22.el7 @epel
python-sss-murmur.x86_64 1.16.0-19.el7_5.5 @updates
python-sssdconfig.noarch 1.16.0-19.el7_5.5 @updates
python-urlgrabber.noarch 3.10-8.el7 @base
python-urllib3.noarch 1.10.2-5.el7 @base
python-urwid.x86_64 1.1.1-3.el7 @base
python-yubico.noarch 1.2.3-1.el7 @base
python2-caribou.noarch 0.4.21-1.el7 @base
python2-cryptography.x86_64 1.7.2-2.el7 @base
python2-ipaclient.noarch 4.5.4-10.el7.centos.3 @updates
python2-ipalib.noarch 4.5.4-10.el7.centos.3 @updates
python2-pyasn1.noarch 0.1.9-7.el7 @base
python2-pyasn1-modules.noarch 0.1.9-7.el7 @base
python3-rpm-macros.noarch 3-22.el7 @epel
python34.x86_64 3.4.9-1.el7 @epel
python34-devel.x86_64 3.4.9-1.el7 @epel
python34-libs.x86_64 3.4.9-1.el7 @epel
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