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Issues
(1–14 of 14)
Title
T
P
Status
Votes
Assignee
Created
Updated
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#37: Rsem runs on the Aligned.out_unique.bam file
bug
major
new
2017-02-08
2017-02-13
#35: Rseqc genebody_coverage.py requires bam-file indexed by samtools
bug
minor
new
2017-02-06
2017-02-07
#30: scrnaseq: *Aligned.toTranscriptome.out.bam is created when it shouldn't?
scrnaseq
bug
minor
new
2017-01-25
2017-01-27
#31: Typo in config regarding ERCC
scrnaseq
bug
minor
new
2017-01-25
2017-01-26
#25: r-genomicfeatures needed as dependency for some package
bug
major
new
2017-01-14
2017-01-16
#21: Fix conda install docs
bug
minor
resolved
Per Unneberg
2017-01-11
2017-01-11
#20: Fix conda package name
bug
minor
resolved
Per Unneberg
2017-01-11
2017-01-11
#17: pytest -D option fails
bug
major
resolved
2016-12-25
2016-12-25
#16: Tests failing for new snakemake_rules dependency
bug
major
resolved
2016-11-04
2016-11-05
#13: Look into details of star output to rsem input
scrnaseq
bug
major
new
2016-11-03
2016-11-03
#2: picard mark_duplicates log removed
atacseq
bug
major
resolved
Per Unneberg
2016-10-26
2016-11-02
#10: star log functions fail due to not creating output
scrnaseq
bug
major
resolved
2016-11-02
2016-11-02
#9: rsem fails on adjacent reads not being mates of paired-end read
scrnaseq
bug
major
resolved
2016-11-02
2016-11-02
#1: rsem version 1.2.28 incompatibility with star
scrnaseq
bug
major
resolved
Per Unneberg
2016-10-25
2016-11-02
