Source code for the open evaluation framework CITREC

See http://www.sciplore.org/projects/citrec

The code includes:

  1. parsers for the PMC OAS and the TREC Genomics collection as well as tools to retrieve MeSH and article metadata from NCBI resources (package org.sciplore.citrec.dataimport)

  2. tools to statistically evaluate retrieval results using a top-k or a rank-based analysis (package org.sciplore.citrec.eval)

  3. implementations of similarity measures and code to calculate the MeSH-based gold standard (package org.sciplore.citrec.sim)