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modulefiles / GATK / 1.5-11

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#%Module 1.0
#

module-whatis "Sets up Genome Analysis Toolkit (GATK)"

set 	 GATK_HOME	/usr/local/GenomeAnalysisTK-1.5-11-g5c5d8e7/
prepend-path  PATH      $GATK_HOME

# some GATK programs use Rscript in the background, so add R to the path as well
prepend-path  PATH   	 /usr/local/R-2.15-64_cluster/bin

set-alias GATK "java -Xmx1000m -jar $GATK_HOME/GenomeAnalysisTK.jar"