Source

modulefiles / GATK / 1.6.13

#%Module 1.0
#

module-whatis "Sets up Genome Analysis Toolkit (GATK) v 1.6-13-g91f02df"

set 	 GATK_HOME	 /usr/local/gatk/GenomeAnalysisTK-1.6-13-g91f02df
prepend-path  PATH      $GATK_HOME

# some GATK programs use Rscript in the background, so add R to the path as well
prepend-path  PATH   	 /usr/local/R-2.15-64_cluster/bin

set-alias GATK "java -Xmx1000m -jar $GATK_HOME/GenomeAnalysisTK.jar"