1. Sean Davis
  2. modulefiles

Source

modulefiles / GATK / 2.3-0

#%Module 1.0
#
 
module-whatis "Sets up Genome Analysis Toolkit (GATK) v GenomeAnalysisTK-2.3-0-g9593e74"

set 	 GATK_HOME	/usr/local/gatk/GenomeAnalysisTK-2.3-0-g9593e74
prepend-path  PATH      $GATK_HOME

# some GATK programs use Rscript in the background, so add R to the path as well
prepend-path  PATH   	 /usr/local/R-2.15-64_cluster/bin

set-alias GATK "java -Xmx1000m -jar $GATK_HOME/GenomeAnalysisTK.jar"