Commits

Author Commit Message Labels Comments Date
Sean Davis
minor adjustments to SV code
Sean Davis
Added some structural variant stuff
Sean Davis
sequencing_example.Rnw edited online with Bitbucket
Sean Davis
Modifications and additions for illumina expression from idat The illumina expression processor now includes both p-value calculation and featuredata extraction from an illumina annotation package (specifically, must include ReporterGroupName).
Sean Davis
Added illumina idat to expression reader.
Sean Davis
Added simple sailfish RNA parser
Sean Davis
Filling out the pubmed query stuff a bit
Sean Davis
Merge branch 'master' of bitbucket.org:seandavi/rpressa
Sean Davis
Adds feature to fix #2 Added feature to add baseline term to getQueryCounts requested by Parthav.
Tags
v1.0.5
Sean Davis
merged from bitbucket
Sean Davis
Disabled sequencing_example vignette as I have removed the sequencing data from the package
Tags
v1.0.4
Sean Davis
Removed unnecessary Sweave.sty
Sean Davis
Added pubmed query functionality, closes issue #1
Sean Davis
Initial commit
Sean Davis
Added a few imports and fixed bug in AgilentSetascghraw.
Sean Davis
Removed IGVSession.R as this is going nowhere
Sean Davis
Added CGHbase as a suggested package to get cghRaw class
Sean Davis
Bumped version information
Sean Davis
Merge branch 'master' of http://watson.nci.nih.gov/git/Rpressa
Sean Davis
Add loadSNPChipData.R
Sean Davis
Added .DS_Store to .gitignore.
Sean Davis
Added some classes and methods for dealing with IGV sessions
Sean Davis
Added coersion from AgilentSet to CGHbase::cghRaw
Sean Davis
Removed another stray browser() call from readAgilent
Sean Davis
Check to see that all arrays are the same size as they are read using readAgilent
Sean Davis
readAgilent for cgh now adds chrom, start, and end locations to featureData using splitAgilentChromLocs
Sean Davis
replaced "as.bool" with as.logical
Sean Davis
Removed stray "browser()" call
Sean Davis
Fixed issue in readAgilent where an annotation column is not present in data file to give a warning, but to go ahead and load the data anyway
Sean Davis
merged in changes from home
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