Commits

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Author Commit Message Labels Comments Date
Sean Davis
Merged johanneskoester/snakemake into master
Johannes Köster
Merge branch 'output_index'
Johannes Köster
Check for setuptools.
Johannes Köster
Implemented a min_version function to require a minimum snakemake
Johannes Köster
Fixed workdir handling in cluster mode.
Johannes Köster
Fixed cluster execution of secondary target rules.
Johannes Köster
Fixed relative includes.
Johannes Köster
Always open Snakefiles as utf-8.
Johannes Köster
Minor.
Johannes Köster
Merged in keren/snakemake/critical_test_fix (pull request #17)
Johannes Köster
Update output index after replacing rule.
Johannes Köster
Fixed listfiles with wildcard in top directory.
Kemal Eren
renamed 'test16' to 'test_report'
Kemal Eren
do not check md5sum for tests with stochastic output
Kemal Eren
test subworkflows get their own tmp working directory
Kemal Eren
made test_url_encode pass
Kemal Eren
made test_shell pass. must decode bytes.
Kemal Eren
made test 15 pass
Kemal Eren
made test14 pass
Kemal Eren
made test05 pass
Kemal Eren
made tests 01 and 02 pass
Kemal Eren
Fix a critical test bug.
Johannes Köster
Tuning.
Johannes Köster
Minor.
Johannes Köster
Fixed output index.
Johannes Köster
Use proper rules
Johannes Köster
Fixed output index matching to find all prefixes.
Johannes Köster
Initial import of output index.
Johannes Köster
Merge branch 'master' of bitbucket.org:johanneskoester/snakemake
Johannes Köster
Fixed config param parsing with python 3.2.
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