I am running sequenza.extract on a binned compressed seqz file.
Here is the output:
Processing [name here]: Error in data.frame(chrom, pos, wins.data, stringsAsFactors = FALSE) : arguments imply differing number of rows: 109, 0 In addition: Warning message: In numericChrom(chrom) : NAs introduced by coercion 1 variant calls. 1 copy-number segments. 109 heterozygous positions. 7704 homozygous positions.
I would greatly appreciate your help in resolving this issue.
Thank you very much.