Author Commit Message Labels Comments Date
Aleš Erjavec avatarAleš Erjavec
Added obiKEGG2 package to the setup.py script.
Aleš Erjavec avatarAleš Erjavec
Added import of orngEnviron. Check the geneset taxids for valid ids.
Marko Toplak avatarMarko Toplak
Deduplicated code from obiExperiments in OWGenotypeDistances. OWQualityControl: python 2.6 support.
Marko Toplak avatarMarko Toplak
Started obiGeneSetSig (new interface for gene set signatures) with Minca's SetSig.
Marko Toplak avatarMarko Toplak
SetSig2 (which returns a domain) returns the same results as SetSig.
Marko Toplak avatarMarko Toplak
Prepared obiAssess for testing.
Marko Toplak avatarMarko Toplak
obiGeneSets can now load gene sets from a dictionary or a list of pairs (name, genes).
Aleš Erjavec avatarAleš Erjavec
Updated setup.py script
Aleš Erjavec avatarAleš Erjavec
Fixed contextmanager generators. Disable widget GUI update on new data and changed distance measure.
Aleš Erjavec avatarAleš Erjavec
Added some basic error warning reporting. Minor bug fixes.
Marko Toplak avatarMarko Toplak
obiDicty: support for raw coverage.
Aleš Erjavec avatarAleš Erjavec
Fixed an error when receiving new (different) dataset due to non cleared widget state.
Aleš Erjavec avatarAleš Erjavec
Fixed a error with the use of filter function (needs to filter only Nones not zeros). Show feature name in tooltips.
Aleš Erjavec avatarAleš Erjavec
Code cleanup.
Aleš Erjavec avatarAleš Erjavec
Added caching of computed distances. Can now change the base for each group individually and the base can be from the background.
Aleš Erjavec avatarAleš Erjavec
Some code cleanup, added docstrings.
Aleš Erjavec avatarAleš Erjavec
Moved Quality Control widget out of prototypes.
Aleš Erjavec avatarAleš Erjavec
More work on Quality Control widget (now in semi-useful state).
Aleš Erjavec avatarAleš Erjavec
Added obiExperiments module (functions from Genotype Distances widget).
Aleš Erjavec avatarAleš Erjavec
Added Quality Control widget prototype.
Marko Toplak avatarMarko Toplak
Orange.data.variable -> Orange.feature
Aleš Erjavec avatarAleš Erjavec
Pre cache pathways, using (KEGG, pathways) gene set hierarchy.
Aleš Erjavec avatarAleš Erjavec
Added comment to requests use of keep-alive.
Aleš Erjavec avatarAleš Erjavec
Fixed taxid mapping in to_taxid function.
Aleš Erjavec avatarAleš Erjavec
Include class name in the warning.
Aleš Erjavec avatarAleš Erjavec
Removed unneeded imports, fixed some errors.
Aleš Erjavec avatarAleš Erjavec
obiGeneSets.keggGeneSets now uses obiKEGG2.
Aleš Erjavec avatarAleš Erjavec
Fixed and added some tests for obiKEGG2
Aleš Erjavec avatarAleš Erjavec
Changed default configuration.
Aleš Erjavec avatarAleš Erjavec
Added EnzymeEntry class.
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