Author Commit Message Labels Comments Date
Aleš Erjavec avatarAleš Erjavec
Create the destination directory if it does not exist.
Aleš Erjavec avatarAleš Erjavec
Added new icons by Peter Cuhalev and replaced existing ones with expanded paths.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: assess now works even if gene matcher did not perfectly match the whole file.
Marko Toplak avatarMarko Toplak
Version bump.
Marko Toplak avatarMarko Toplak
SetSig uses statc for pearsonr. Around 10x speedup compared to numpy.
Marko Toplak avatarMarko Toplak
updatemiRNA script now also works.
Marko Toplak avatarMarko Toplak
Moved common functionality of the server files update scripts to a separate file.
Marko Toplak avatarMarko Toplak
Fixed update scripts for STRING and Taxonomy.
Marko Toplak avatarMarko Toplak
Fixed update scripts for MeSH, GO, HomoloGene, NCBI_geneinfo, OMIM, PPI. Moved wget to Orange.utils.
Marko Toplak avatarMarko Toplak
Removed KEGG update scripts, updated (and ran) dicty base and GEO.
Marko Toplak avatarMarko Toplak
Copied server update scripts from Orange source.
Marko Toplak avatarMarko Toplak
Removed the old version of obiKEGG. Renamed obiKEGG2 -> obiKEGG.
Marko Toplak avatarMarko Toplak
Removed use of the old obiKEGG module. Hacked a REST version for gene aliases in obiKEGG2.
Marko Toplak avatarMarko Toplak
Updated the description.
Marko Toplak avatarMarko Toplak
Fixes for obiGeneSets. Compatible files were generated and uploaded to SF.
Marko Toplak avatarMarko Toplak
Classes for storing gene set data moved to Orange.bio.geneset. obiGeneSets adapted to make new pickled classes.
Marko Toplak avatarMarko Toplak
obiGeneSetSig: speedup of ASSESS.
Aleš Erjavec avatarAleš Erjavec
Added 'Enrichment Report' output to the GO Browser widget.
Marko Toplak avatarMarko Toplak
Speed up PCA and PLS (obiGeneSetSig).
Marko Toplak avatarMarko Toplak
Another speedup of SetSig. Now it is 30% faster on DLBCL.tab with no_unknowns=True.
Marko Toplak avatarMarko Toplak
Speed up of setsig (obiGeneSetSig).
Marko Toplak avatarMarko Toplak
Make the datasets with joined class values picklable.
Marko Toplak avatarMarko Toplak
obiGsea.takeClasses: now builds a class value with get_value_from.
Aleš Erjavec avatarAleš Erjavec
Fixed wrong relative import.
Marko Toplak avatarMarko Toplak
gene matching: using generators for set_targets input now works correctly
Aleš Erjavec avatarAleš Erjavec
Added svg icons to MANIFEST.in
Aleš Erjavec avatarAleš Erjavec
Added SVG icons for some widgets.
Aleš Erjavec avatarAleš Erjavec
Fixed relative import.
Aleš Erjavec avatarAleš Erjavec
Moved Gene Atlas Tissue Expression widget out of prototypes.
Lan Zagar avatarLan Zagar
Save settings in Atlas widget.
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