Commits

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Author Commit Message Labels Comments Date
Marko Toplak
Refactoring of obiGeneSetSig.
Marko Toplak
Added PCA transformation to obiGeneSetSig.
Marko Toplak
Added Mean and Median to the new gene set signatures module.
Aleš Erjavec
Deleted old GOLib licenese.
Aleš Erjavec
Cosmetic changes.
Aleš Erjavec
Added LICENSE.txt
Aleš Erjavec
A workaround for a bug in setuptools.
Marko Toplak
Added caching of gene matchers.
Aleš Erjavec
Added tag 1.1a for changeset 973f84dca0f2
Aleš Erjavec
Cleanup setup.py script, use setuptools if available.
Tags
1.1a
Marko Toplak
Trivial merge.
Marko Toplak
Fixed a bug in obiGene (umatch did not work in Match objects). Gene set signatures method now accept examples from different domains on the input.
Aleš Erjavec
Show a warning with a download link if suds is not installed.
Aleš Erjavec
Fixed scene alignment (align left to prevent scene jittering when resizing). Fixed an RuntimeError due to a deleted QGraphicsWidget whose reference was still held from Python. Fixed an error when changing the distance measure with no input to the widget.
Aleš Erjavec
Use Orange buffer dir for obiKEGG2 files.
Aleš Erjavec
Only download the .xml kgml files in a separate thread, don't parse it (pyexpat in a thread seems to crash Qt).
Marko Toplak
Gene matcher now have a __call__ function and return a Match object, which is used for matching. Backward compatibility was retained.
Aleš Erjavec
Fixed some warnings.
Aleš Erjavec
Fixed an error when initializing a GeneSet from an iterator.
Aleš Erjavec
Added obiKEGG2 package to the setup.py script.
Aleš Erjavec
Added import of orngEnviron. Check the geneset taxids for valid ids.
Marko Toplak
Deduplicated code from obiExperiments in OWGenotypeDistances. OWQualityControl: python 2.6 support.
Marko Toplak
Started obiGeneSetSig (new interface for gene set signatures) with Minca's SetSig.
Marko Toplak
SetSig2 (which returns a domain) returns the same results as SetSig.
Marko Toplak
Prepared obiAssess for testing.
Marko Toplak
obiGeneSets can now load gene sets from a dictionary or a list of pairs (name, genes).
Aleš Erjavec
Updated setup.py script
Aleš Erjavec
Fixed contextmanager generators. Disable widget GUI update on new data and changed distance measure.
Aleš Erjavec
Added some basic error warning reporting. Minor bug fixes.
Marko Toplak
obiDicty: support for raw coverage.
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