I just created a new repository, and it's working fine. The only problem is that when I go to my bitbucket page using my CNAME domain, the link to the repo is wrong. It inserts my username after the CNAME and before the repo name, which results in a 404. Links to repos that I created earlier are working fine. Was there a recent change that may have caused this?
Also, not sure if it's related, but the space this repo is using is not counted in my account usage (it's my largest by far, so I'd notice). The files seem to be there though, and I'm not getting any errors.