Provide a summary of missing, present and update-needing input and output files.

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Issue #15 resolved
Johannes Köster created an issue

A nice idea of @feeldead.

Comments (6)

  1. Feng Jianxing

    Currently, if all intermediate files are removed, snakemake would do nothing. But in most cases, we want to regenerate all the results. Of course, we can delete all downstream files and everything is working well. However, it is a little bit anti-intuition. What do you think?

  2. Feng Jianxing

    Well, if upstream files are updated, we may want to update all the results even some intermediate files are missing.

  3. Johannes Köster reporter

    Yes that is correct. In such a case you want an update. Seems like a bug due to some rewrites. I am looking into it right now.

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