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Declined
#210 · Created  · Last updated

Declined pull request

Superseded by pull request #290.

Closed by: ·2018-05-09

Description

  • Added necessary definitions and declarations for job group functionality to parser.py, workflow.py and rules.py. Added comments for personal orientation, those will be removed later.

  • Updated jobs.py, rules.py and the executors.py run_wrapper method to work with given job groups. Added a first simple test for the groups. Added 'group' to the snakemake vim syntax.

  • Removed a typo causing test failure.

  • Added missing group statements in executor.py.

  • Updated .gitignore to not track the virtual environment folder.

  • Solved problem causing test_shadow to fail.

  • added group declaration to script.py

  • Solved order problem in parser.py.

  • Added group to wrapper.py.

  • Updated script.py.

  • Cleaned up declarations in jobs.py.

  • Updated rules.py and script.py.

  • Solved al Problem in rules.py.

  • Updated rules.py and workflow.py. Changed the group test to be automated.

  • Updated the groups test. Some changes in rules.py.

  • Finalized the group test.

  • Cleaned up a mistake in test_groups.py.

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