Azure integration

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#378 · Created  · Last updated

Merged pull request

Merged in sebastian_kurscheid/snakemake/azure_integration (pull request #378)

a255063·Author: ·Closed by: ·2019-10-02

Description

  • fixes broken conda shell command

  • adds methods to access Azure Storage - work in progress!

  • adds methods to access Azure Storage

  • further programming

  • ignores virtualenv directory

  • adds exception for Azure file/blob operations

  • makes minor changes to private methods

  • fixes typo

  • changes version of conda from which on to use "conda activate" - see https://docs.conda.io/projects/conda/en/latest/release-notes.html?highlight=release%20notes#id105

  • fixes indentation error

  • corrects method name

  • adds required helper functions for parsing file paths to container/blob names

  • amends earlier commit

  • adds missing modules

  • fixes variable names

  • assigns correct Azure account object to RemoteProvider class

This is an attempt at adding Azure Blob Storage as a RemoteProvider/RemoteObject to snakemake. The major prerequisite would be installation of the azure metapackage, which is currently only well distributed through PyPI.

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