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#Result file#
The result file is an tab seperated file and can have two seperate formates. These can be called by setting the variable -p.
##Compact## Column definition:
- [#1:ID] comparison ID
- [#2:NameGroupA] Group A
- [#3:NameGroupB] Group B
- [#4:p.value] estimated p-value by binomial distribution
- [#5:FDR] corrected p-value used Benjamini-Hochberg.
- [#6:relationType] showing if it is a deletion or an enrichment
- [#7:PFC] mean link score between the groups
##Large## Column definition:
- [#1:ID] comparison ID
- [#2:NameGroupA] Group A
- [#3:NameGroupB] Group B
- [#4:p.value] estimated p-value by binomial distribution
- [#5:FDR] corrected p-value used Benjamini-Hochberg.
- [#6:relationType] showing if it is a deletion or an enrichment
- [#7:PFC] mean link score between the groups
- [#8:id.first] internal groupID
- [#9:id.second] internal groupID
- [#10:groupSize.first] amount of elements group A
- [#11:groupSize.second] amount of elements group B
- [#12:groupLinkDegree.first] number of outgoing links group A
- [#13:groupLinkDegree.second] number of outgoing links group B
- [#14:expectedLinks] approximated expected links between groups, by random sampling
- [#15:sharedOriglinks] links between groups in real network
- [#16:sharedRndlinks] links between groups observed through monte carlo sampling
#Pre processed network file#
First 8 rows contain valuable information about the model generation which is needed for further analysis. Each row in the main file represents a link in the random network model:
- [#1:NodeA] ID of node A
- [#2:NodeB] ID of node B
- [#3:Random Links] amount of links observed
- [#4:Real Links] connected in real network
- [#5:Link Weight] connection weight in real network
Updated