1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (1–25 of 111)

Title T P Status Votes Assignee Created Updated Actions
#41: FileNotFoundError: [Errno 2] No such file or directory: '**/Wdir/php_results/php_db_Prediction_Allhost.csv'
bug major closed
#119: Adding archaeal MAGs to the host database but no bacteria MAGs
bug major closed
#116: How to choose between Host_prediction_to_genus_m90.csv and Host_prediction_to_genome_m90.csv
enhancement major closed
#118: Whether splitting files impact the host prediction results?
bug major closed
#22: Error in adding MAGs to standard DB
bug major closed
#2: [UNEXPECTED ERROR] Error at the step 7 while loading all parse data
bug major resolved
#10: raise ValueError('Unexpected result of `predict_function` '
bug major open
#88: iPHoP v1.3.3: raise ValueError('Unexpected result of `predict_function` '
bug major closed
#107: # Can I use my own genomes only as db?
proposal major closed
#108: Run iphop only on host lineages of interest
enhancement major closed
#112: match criteria for iphop
bug major closed
#114: DB download verification error
bug major closed
#113: Host_prediction_to_genus_m90.csv and Host_prediction_to_genome_m90.csv doens't apper at the end
bug major closed
#111: FileNotFoundError: [Errno 2] No such file or directory
bug major closed
#110: did not find a decorated file for the archaeal tree
bug major closed
#7: No new spacers in added custom MAGs
bug minor open
#49: iphop v1.3.2 not compatible with pandas > 2.0
bug trivial closed
#89: We have an issue with db/Host_Genomes/Host_Genomes.03.nsq: a0f45977acea9c54d3bc464a77c0182e while we expected d590aa6f6d768a39ad6d2fceb0868fca -- we stop here
bug major on hold
#76: ERROR:Cannot open model directory iphop_db/Test_db_rw/db/wish_models.
bug major closed
#75: 。
task major closed
#74: "Running Host Db building function " takes very long time
bug major on hold
#70: Empty result in Host_prediction_to_genus_m90.tsv. WARNING of empty blastn result. Wdir/blastgenomes.tsv.log is also empty.
bug major closed
#64: Fatal error with getting CRISPR arrays from new MAGs on the Docker version
bug major closed
#57: RaFAH results were empty
bug major closed
#50: Installation error
bug major closed
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