Update the PERL5LIB variable

[Yujie Zhang]

Hi Simon,

Here is the error I got:

FileNotFoundError: [Errno 2] No such file or directory: 'iphop_test_results/test_input_phages_iphop/Wdir/rafah_out/Full_CDS_Prediction.faa'

So I update the PERL5LIB variable as follow

(/project/yujie-metagenomics/YJ-Personal/iphop_new) [yujie.zhang@ceres20-compute-71 iphop_new]$ cat ./etc/conda/activate.d/update_bioperl.sh

export OLD_PERL5LIB=$PERL5LIB

export PERL5LIB=$/project/yujie-metagenomics/YJ-Personal/iphop_new/lib/perl5/site_perl/5.22.0

(/project/yujie-metagenomics/YJ-Personal/iphop_new) [yujie.zhang@ceres20-compute-71 iphop_new]$ cat ./etc/conda/deactivate.d/update_bioperl.sh

export PERL5LIB=${OLD_PERL5LIB}

unset OLD_PERL5LIB

it still showed the same error. Do you have any suggestions? The ragah.log is below:

(/project/yujie-metagenomics/YJ-Personal/iphop_new) [yujie.zhang@ceres20-compute-71 Wdir]$ cat rafah.log

perl: error while loading shared libraries: libnsl.so.1: cannot open shared object file: No such file or directory

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Thanks,

Yujie

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[Yujie Zhang]

Please discard this issue. I found I'm running into the same issue I had previously.

Thanks,

Yujie

[Simon Roux]

Solved