Conda install package conflicts

[psampara]

Hi Simon, I am trying to install based on the Conda recipe. However, I am getting a package conflict error. The error text file is attached. Could you please help me with this issue?

Commands ran to arrive at the issue:

conda create -n iphop_env python=3.8 
conda activate iphop_env 
conda install -c conda-forge -c bioconda iphop

‌

Thanks!
Pranav

[Simon Roux]

Hi Pranav,

That can happen with conda, and unfortunately is highly dependent on the tool you use to install your packages and your machine. My recommendations would be (i) switch to mamba, and (ii) install iphop at the creation of the environment, rather than after. So something like:

mamba create -c conda-forge -c bioconda -n iphop_env iphop

may solve this issue

Best,

Simon

[psampara]

An upgrade of the conda base environment seemed to have solved the issue. Thanks Simon!

[Simon Roux]

Solved