1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (1–25 of 108)

Title T P Status Votes Assignee Created Updated Actions
#107: # Can I use my own genomes only as db?
proposal major closed
#108: Run iphop only on host lineages of interest
enhancement major closed
#112: match criteria for iphop
bug major closed
#114: DB download verification error
bug major closed
#113: Host_prediction_to_genus_m90.csv and Host_prediction_to_genome_m90.csv doens't apper at the end
bug major closed
#111: FileNotFoundError: [Errno 2] No such file or directory
bug major closed
#110: did not find a decorated file for the archaeal tree
bug major closed
#7: No new spacers in added custom MAGs
bug minor open
#49: iphop v1.3.2 not compatible with pandas > 2.0
bug trivial closed
#89: We have an issue with db/Host_Genomes/Host_Genomes.03.nsq: a0f45977acea9c54d3bc464a77c0182e while we expected d590aa6f6d768a39ad6d2fceb0868fca -- we stop here
bug major on hold
#76: ERROR:Cannot open model directory iphop_db/Test_db_rw/db/wish_models.
bug major closed
#75: 。
task major closed
#74: "Running Host Db building function " takes very long time
bug major on hold
#70: Empty result in Host_prediction_to_genus_m90.tsv. WARNING of empty blastn result. Wdir/blastgenomes.tsv.log is also empty.
bug major closed
#64: Fatal error with getting CRISPR arrays from new MAGs on the Docker version
bug major closed
#57: RaFAH results were empty
bug major closed
#50: Installation error
bug major closed
#48: Could not load library libcudnn_cnn_infer.so.8
bug major on hold
#47: Error with rafah : libnsl.so.1
bug major on hold
#40: Installation problem - packages conflicts
bug critical closed
#41: FileNotFoundError: [Errno 2] No such file or directory: '**/Wdir/php_results/php_db_Prediction_Allhost.csv'
bug major closed
#35: OSError: SavedModel file does not exist
bug major on hold
#27: E tensorflow/stream_executor/cuda/cuda_dnn.cc:359] Loaded runtime CuDNN library: 8.0.4 but source was compiled with: 8.1.0. CuDNN library needs to have matching major version and equal or higher minor version. If using a binary install, upgrade your CuD
bug major closed
#4: Iphop's default predict doesnt run all steps
bug major on hold
#77: iPHoP.latest.tar.gz was not updated to "iPHoP_db_Aug23_rw.tar.gz"
proposal trivial closed
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