1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (26–50 of 111)

Title T P Status Votes Assignee Created Updated Actions
#48: Could not load library libcudnn_cnn_infer.so.8
bug major on hold
#47: Error with rafah : libnsl.so.1
bug major on hold
#40: Installation problem - packages conflicts
bug critical closed
#35: OSError: SavedModel file does not exist
bug major on hold
#27: E tensorflow/stream_executor/cuda/cuda_dnn.cc:359] Loaded runtime CuDNN library: 8.0.4 but source was compiled with: 8.1.0. CuDNN library needs to have matching major version and equal or higher minor version. If using a binary install, upgrade your CuD
bug major closed
#4: Iphop's default predict doesnt run all steps
bug major on hold
#77: iPHoP.latest.tar.gz was not updated to "iPHoP_db_Aug23_rw.tar.gz"
proposal trivial closed
#79: Error in the add_to_db step. Cannot create the file Host_genomes.nal
bug major on hold
#80: Warning message: I could not understand the host so I will not use the corresponding line
bug major closed
#81: MAGs for custom host prediction decontamianton issue
proposal minor closed
#82: Unexpected Differences in iPhoP Results: Disappearing GTDB Hits in Custom Databases
bug major closed
#83: How to successfully run add_to_db when archaeal genomes are absent？
bug major open
#84: How to get the genome fasta files in the default database
enhancement minor closed
#85: Small database paths problem
bug minor closed
#100: decorated file not detected in step 8
bug minor on hold
#92: HOW TO understand output file in Wdir folder
enhancement major closed
#90: error with download the iPHoP host database
bug major closed
#93: Building custom database no archaea
bug major closed
#94: Detailed_output_by_tool.csv
task minor closed
#99: WIsH Issues with pipeline
bug trivial closed
#101: PHP issue
bug major closed
#104: Rafah not working
bug major closed
#102: Issue with add_to_db
bug major closed
#3: add MAGs to db
bug minor resolved
#98: FileNotFoundError: [Errno 2] No such file or directory: '/project/pi_rbeinart_uri_edu/michelle/iphop/iphop_db2/Aug_2023_pub_rw/db_infos/gtdbtk.ar122.decorated.tree'
bug major closed
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