1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

Filter by:

Advanced search

Issues (26–50 of 69)

Title T P Status Votes Assignee Created Updated Actions
#61: AttributeError: 'DataFrame' object has no attribute 'append'
bug major closed
#63: Docker version doesn't work with MAG added db
bug major closed
#65: An error occurred while running the WIsH in step 3
bug major closed
#66: [Question] Is it possible to ONLY include custom genomes?
proposal minor closed
#69: Output file for CRISPR
bug minor closed
#71: Conda install package conflicts
bug major closed
#73: Can't calculate distances
bug major closed
#72: Failure at Step 7/3 "Filtering blast data"
bug major closed
#68: Program still running but throwing a memory Error after or during Wish run
bug major closed
#67: AttributeError: module 'iphop.modules.blast_genomes' has no attribute 'run_and_parse_blast_to_host'
bug major closed
#44: OP_REQUIRES? not sure what it is
bug major closed
#20: Step [7/4] can't calculate distances
bug major resolved
#26: FileNotFoundError: [Errno 2] No such file or directory: './Wdir/rafah_out/Full_CDS_Prediction.faa'
bug major resolved
#58: Issues with adding MAGs to db at the VHM step - number issue?
bug major closed
#17: UnsatisfiableError: The following specifications were found to be incompatible with each other
bug major resolved
#46: Can't calculate distances using iphop add_to_db
bug major closed
#53: breakpoint for long time running
bug major closed
#45: outdated database ref
task major closed
#42: error running RaFAH
bug major closed
#36: wish KeyError
bug major closed
#34: Adding MAGs to standard database - [6] Add new genomes to VHM database...
enhancement minor closed
#37: key Error: with custom db
bug major closed
#31: Database for Blastn
bug major resolved
#30: KeyError: '3300006428_5_vs_RS_GCF_008727735.1'
bug major resolved
#32: Issue in adding test MAGs to database
bug major closed
  2. 1
  3. 2
  4. 3