1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (51–69 of 69)

Title T P Status Votes Assignee Created Updated Actions
#29: Some problems with iphop installation using mamba.
bug major resolved
#27: E tensorflow/stream_executor/cuda/cuda_dnn.cc:359] Loaded runtime CuDNN library: 8.0.4 but source was compiled with: 8.1.0. CuDNN library needs to have matching major version and equal or higher minor version. If using a binary install, upgrade your CuD
bug major new
#19: Error with r-rcpp during rafah step
bug major resolved 1
#2: [UNEXPECTED ERROR] Error at the step 7 while loading all parse data
bug major resolved
#12: Database directory needs to be updated
bug trivial resolved
#10: raise ValueError('Unexpected result of `predict_function` '
bug major resolved
#13: GCA_002171125.1.mm is Empty
bug major resolved
#8: Run only specific steps (after step 8)
task minor resolved
#11: Any way to put all the WisH models into one main file?
enhancement minor resolved
#16: Command not found iphop add_to_db
bug major resolved
#15: iPHoP fails at step [6/2] "Get relevant RaFAH scores", FileNotFoundError for Full_Host_Predictions.tsv
bug major resolved
#14: 'Repr_taxonomy' in db_infos/Host_Genomes.tsv
bug major resolved
#5: KeyError: 'N match'
bug major closed
#9: Predict step [9/2]: AttributeError: 'float' object has no attribute 'split'
bug major resolved
#7: No new spacers in added custom MAGs
bug minor closed
#6: Can 'de_novo_wf' be placed by 'classify_wf'
proposal minor closed
#4: Iphop's default predict doesnt run all steps
bug major new
#3: add MAGs to db
bug minor new
#1: Host prediction for viral MAGs.
enhancement minor resolved
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