1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (51–75 of 101)

Title T P Status Votes Assignee Created Updated Actions
#43: How can I make the process faster ( more threads)
enhancement minor closed
#24: FileNotFoundError:[...]prediction.list
bug major closed
#52: utility.py: os.remove instead of os.path.remove
bug minor closed
#51: Can I achieve virus host prediction using only my own MAGs?
proposal major closed
#54: avoid several steps
bug major closed
#56: Update the PERL5LIB variable
bug major closed
#55: lost tips in the tree
bug major closed
#59: Question about add_to_db
bug minor closed
#60: Error in step 3: AttributeError: 'DataFrame' object has no attribute 'append'
bug major closed
#62: Error in [7/1] Loading all parsed data...(using custom database)
bug major closed
#61: AttributeError: 'DataFrame' object has no attribute 'append'
bug major closed
#63: Docker version doesn't work with MAG added db
bug major closed
#65: An error occurred while running the WIsH in step 3
bug major closed
#66: [Question] Is it possible to ONLY include custom genomes?
proposal minor closed
#69: Output file for CRISPR
bug minor closed
#71: Conda install package conflicts
bug major closed
#73: Can't calculate distances
bug major closed
#72: Failure at Step 7/3 "Filtering blast data"
bug major closed
#68: Program still running but throwing a memory Error after or during Wish run
bug major closed
#67: AttributeError: module 'iphop.modules.blast_genomes' has no attribute 'run_and_parse_blast_to_host'
bug major closed
#44: OP_REQUIRES? not sure what it is
bug major closed
#20: Step [7/4] can't calculate distances
bug major resolved
#26: FileNotFoundError: [Errno 2] No such file or directory: './Wdir/rafah_out/Full_CDS_Prediction.faa'
bug major resolved
#58: Issues with adding MAGs to db at the VHM step - number issue?
bug major closed
#17: UnsatisfiableError: The following specifications were found to be incompatible with each other
bug major resolved
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