1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (51–69 of 69)

Title T P Status Votes Assignee Created Updated Actions
#4: Iphop's default predict doesnt run all steps
bug major new
#3: add MAGs to db
bug minor resolved
#97: [Error] when "[6] Add new genomes to VHM database..." - feature to ignore non-fasta files (or directories) in --fna_dir
enhancement minor on hold
#95: implementation of stopped pipeline : "iphop predict"
bug minor closed
#78: issue with conda iphop 1.3.3 and rafah
bug minor closed
#18: (Note) Adding MAGs to host DB
enhancement minor closed
#38: Bioconda and Git Clone Install difficulty
bug minor closed
#43: How can I make the process faster ( more threads)
enhancement minor closed
#52: utility.py: os.remove instead of os.path.remove
bug minor closed
#59: Question about add_to_db
bug minor closed
#66: [Question] Is it possible to ONLY include custom genomes?
proposal minor closed
#69: Output file for CRISPR
bug minor closed
#34: Adding MAGs to standard database - [6] Add new genomes to VHM database...
enhancement minor closed
#8: Run only specific steps (after step 8)
task minor resolved
#11: Any way to put all the WisH models into one main file?
enhancement minor resolved
#7: No new spacers in added custom MAGs
bug minor closed
#6: Can 'de_novo_wf' be placed by 'classify_wf'
proposal minor closed
#1: Host prediction for viral MAGs.
enhancement minor resolved
#12: Database directory needs to be updated
bug trivial resolved
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