1. Simon Roux Avatar Simon Roux
  2. Host_Prediction_Integration
  3. iphop

Issues

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Issues (76–100 of 111)

Title T P Status Votes Assignee Created Updated Actions
#66: [Question] Is it possible to ONLY include custom genomes?
proposal minor closed
#69: Output file for CRISPR
bug minor closed
#71: Conda install package conflicts
bug major closed
#73: Can't calculate distances
bug major closed
#72: Failure at Step 7/3 "Filtering blast data"
bug major closed
#68: Program still running but throwing a memory Error after or during Wish run
bug major closed
#67: AttributeError: module 'iphop.modules.blast_genomes' has no attribute 'run_and_parse_blast_to_host'
bug major closed
#44: OP_REQUIRES? not sure what it is
bug major closed
#20: Step [7/4] can't calculate distances
bug major resolved
#26: FileNotFoundError: [Errno 2] No such file or directory: './Wdir/rafah_out/Full_CDS_Prediction.faa'
bug major resolved
#58: Issues with adding MAGs to db at the VHM step - number issue?
bug major closed
#17: UnsatisfiableError: The following specifications were found to be incompatible with each other
bug major resolved
#46: Can't calculate distances using iphop add_to_db
bug major closed
#53: breakpoint for long time running
bug major closed
#45: outdated database ref
task major closed
#42: error running RaFAH
bug major closed
#36: wish KeyError
bug major closed
#34: Adding MAGs to standard database - [6] Add new genomes to VHM database...
enhancement minor closed
#37: key Error: with custom db
bug major closed
#31: Database for Blastn
bug major resolved
#30: KeyError: '3300006428_5_vs_RS_GCF_008727735.1'
bug major resolved
#32: Issue in adding test MAGs to database
bug major closed
#28: ValueError: could not convert string to float: 'LogLikelihood' and TypeError: Cannot cast array data from dtype('O') to dtype('float64') according to the rule 'safe'
bug major resolved 1
#29: Some problems with iphop installation using mamba.
bug major resolved
#19: Error with r-rcpp during rafah step
bug major resolved 1
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