Concept popup UI

[b]

Basically just improve the formatting here.

1. Add semantic type, under name
2. Format the definitions list. e.g. an html list.
3. make the embedded links into actual hyperlinks
4. Rename “query” to “UMLS concept identifier”

[b]

For genes where we can get data from mygene.info based on entrez id, e.g. mygene.info/v2/gene/1017 the concept popup should contain the fields: "name" "summary" "symbol" "taxid" "type_of_gene": and we should provide lists of pathways and GO terms also provided there.

[b]

The human definitions for the umls concepts seem to have been lost in the current incarnation.

[Richard Bruskiewich]

UMLS definitions restored some time ago, but core issues noted above are not yet implemented.

[b]

Just to enhance clarity here. We would like to improve the content and the appearance of this, currently yellow, box

(Note that the "type" parameter which shows up at 'meta' is probably not useful to the user as it is referring only to what database the concept came from - in this case the metathesaurus. Would prefer to see 'semantic type' as used in the rest of the interface.)

[Richard Bruskiewich]

Issue #61 was marked as a duplicate of this issue.

[b]

We should add the synonym list to this. It gets pretty confusing when you do a search for "Miller Syndrome" and it comes back (correctly) with "genee-wiedeman syndrome". It gets more confusing with genes of course.

[b]

This needs to be finished.

[Kenneth Bruskiewicz]

How about now?

Just looking for feedback on the look. I prefer "whitespace" separation over solid borders, but if there are any adjustments you would like please let me know.

I'll get working on the synonym list right away as well as a couple more adjustments to the table.

[b]

The version deployed right now is an improvement. Minor details: remove the "quotes" around everything. Convert the semantic type abbreviations to the full versions - as used in the 'advanced categorical filtering' menu. Take the ["..", "..."] structure out of the paragraph definition - make it just look like text for a human. For example, now we see:

CUI "C0428977" Name "Bradycardia" Semtype "fndg" Definition ["NCI","An abnormally slow heart rate. Thresholds for different age, gender, and patient populations exist."]

make it look like: Name(s) Bradycardia Definition An abnormally slow heart rate. Thresholds for different age, gender, and patient populations exist. (Source: NCI) Semantic Type(s) Finding Unique ID(s) C0428977

[Kenneth Bruskiewicz]

Changes made, includes synonyms