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-- Directory contents:

Makefile	For compiling the xhmm source code
params.txt	"Typical" parameters for running xhmm (may need to be modified by the user)


sources/scripts/xcnv_to_cnv	C-shell script for converting the .xcnv XHMM output to PLINK's .cnv format

sources/scripts/example_make_XHMM_plots.R	R script for plotting XHMM metrics and CNV calls
sources/scripts/R_functions			R code for making these plots and parsing XHMM output


-- Directories containing C++ source code for XHMM and hmm++ library:
sources/include
sources/lib
sources/execs
sources/hmm++