Author Commit Message Labels Comments Date
Borja Sotomayor avatarBorja Sotomayor
Remove GO Transfer API client.
Borja Sotomayor avatarBorja Sotomayor
Fail gracefully if endpoint ls fails
Borja Sotomayor avatarBorja Sotomayor
Not on BioNimbus anymore.
Borja Sotomayor avatarBorja Sotomayor
Updated GO code to v10 API. Updated location of root certificate.
Default avatar davi...@gmail.com
Swift scripts
Default avatar davi...@gmail.com
QC swift scripts
Default avatar Bryce Allen
merge upstream
Default avatar Bryce Allen
add cid file to condor_run temp dir for debugging
Mike Steder avatarMike Steder
Merged in changes from bryce
Mike Steder avatarMike Steder
Added swift scripts and hacked demuxer to work with chromosome files
Default avatar Bryce Allen
merge upstream
Default avatar Bryce Allen
fix qc2-part fastq conversion
Mike Steder avatarMike Steder
Merged in yet more tool changes.
Mike Steder avatarMike Steder
Merged in some tool changes from byrce
Mike Steder avatarMike Steder
added map2bam tool
Mike Steder avatarMike Steder
got demuxer working
Mike Steder avatarMike Steder
Modified map2sam script to include lane/part filters
Mike Steder avatarMike Steder
Working on bionimbus.
Default avatar Bryce Allen
improve qc scripts and doc
Default avatar Bryce Allen
remove dup date debug
Default avatar Bryce Allen
update qc pipelines, add new version
Default avatar Bryce Allen
add qc scripts, update cgapipe
Default avatar Bryce Allen
make cgapipe work on data with errors
Mike Steder avatarMike Steder
Added tool demuxer.
davidkelly999 avatardavidkelly999
Several updates to swift scripts
Default avatar Bryce Allen
merge cgapipe with upstream
Default avatar Bryce Allen
add cgapipe script
davidkelly999 avatardavidkelly999
Initial commit of swift scripts for cga pipeline
Mike Steder avatarMike Steder
Merged in changes from bionimbus
Mike Steder avatarMike Steder
Added hack to allow selection of lane and part when running map2sam
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