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Supplementary files for BMC Bioinformatics publication of Visibiome

Figures list:

  • Supplementary Figure 1: Barplot of Bray-Curtis analysis running time with different sample sizes in low and high stress situation on an EC2 t2.medium machine.
  • Supplementary Figure 2: Barplot of GNAT/UniFrac running time with different sample sizes in low stress situation on EC2 t2.medium machine.
  • Supplementary Figure 3: Barplot of GNAT/UniFrac running time with different sample sizes in high stress stiuations on EC2 t2.medium and c4.xlarge machines. The purple dotted line shows the average running time for all jobs.
  • Supplementary Figure 4: Screenshot of the search form for Visibiome with all combinations of settings for the search.
  • Supplementary Figure 5: Screenshot of an example Dashboard for a user. The dashboard shows the running jobs and queued jobs as well as completed jobs and jobs that reached an error while processing. It features pagination, rerun and deleting.
  • Supplementary Figure 6: Screenshot of the barcharts visualization of a job. Barcharts are zoomable which enables users to delve into the culprits of the matches for their sample against the database samples.
  • Supplementary Figure 7: Screenshot of the PCoA visualization of a job. PCoA plots are 2-dimensional but the first three dimensions are enumerated. Plots are zoomable and hoverable to display more information for matched samples.
  • Supplementary Figure 8: Screenshot of the dendrogram visualization of a job. Dendrogram plots show the relation between samples and the database sample's EnvO color. The samples can be hovered over to display more information.
  • Supplementary Figure 9: Barplot of the number of comparisons made for GNAT and AESA search on different ranges.
  • Supplementary Figure 10: Barplot of AESA/UniFrac running time with different ranges in low stress situation on EC2 t2.medium machine.
  • Supplementary Figure 11: Barplot of AESA/UniFrac running time with different ranges in high stress situation on EC2 t2.medium machine.