ITE / code / estimators / quick_tests / quick_test_KEJR1.m

%function [] = quick_test_KEJR1()
%Quick test for Jensen-Renyi kernel-1 estimators: analytical expression vs estimated value as a function of the sample number. In the test, normal variables are considered.

%Copyright (C) 2013 Zoltan Szabo ("", "zoltan (dot) szabo (at) gatsby (dot) ucl (dot) ac (dot) uk")
%This file is part of the ITE (Information Theoretical Estimators) Matlab/Octave toolbox.
%ITE is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
%the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
%This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
%MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
%You should have received a copy of the GNU General Public License along with ITE. If not, see <>.

%clear start:
    clear all; close all;

    distr = 'normal'; %fixed
    d = 1; %dimension of the distribution
    alpha_K = 2; %parameter of the Jensen-Renyi kernel; fixed; for alpha_K =2 we have explicit formula for the Renyi-entropy, and hence to the Jensen-Renyi kernel.
    u_K = 0.8;%>0, parameter of the Jensen-Renyi kernel
    num_of_samples_v = [1000:2000:50*1000]; %sample numbers used for estimation
    %estimator (of Jensen-Renyi kernel), meta:
        cost_name = 'EJR1_HR';
    num_of_samples_max = num_of_samples_v(end);
    L = length(num_of_samples_v);
    %initialize cost object, set the alpha and the  parameter:
        co = K_initialization(cost_name,1,{'alpha',alpha_K,'u',u_K}); %{'alpha',alpha_K,'u',u_K}: set the 'alpha' field
    K_hat_v = zeros(L,1); %vector of estimated kernel values
%distr, d -> samples (Y1,Y2), analytical formula for the Jensen-Renyi kernel (K):
    switch distr
        case 'normal'
            %generate samples (Y1,Y2):
                %Y1~N(m1,s1^2xI), Y2~N(m2,s2^2xI):
                   m1 = randn(d,1);  s1 = rand;
                   m2 = randn(d,1);  s2 = rand;
                Y1 = randn(d,num_of_samples_max) * s1 + repmat(m1,1,num_of_samples_max);
                Y2 = randn(d,num_of_samples_max) * s2 + repmat(m2,1,num_of_samples_max);
            %analytical value of Renyi entropy (ref.: Fei Wang, Tanveer Syeda-Mahmood, Baba C. Vemuri, David Beymer, and Anand Rangarajan. Closed-Form Jensen-Renyi Divergence for Mixture of Gaussians and Applications to Group-Wise Shape Registration. Medical Image Computing and Computer-Assisted Intervention, 12: 648–655, 2009.)
    	        ms = [m1,m2];
    	        ss = [s1,s2];
                H = compute_H2([1/2,1/2],ms,ss);%quadratic Renyi entropy
            K = exp(-u_K*H);
    Tk = 0;%index of the sample number examined   
    for num_of_samples = num_of_samples_v
        Tk = Tk + 1;
        K_hat_v(Tk) = K_estimation(Y1(:,1:num_of_samples),Y2(:,1:num_of_samples),co);
    legend({'estimation','analytical value'});
    xlabel('Number of samples');
    ylabel('Jensen-Renyi kernel-1');
Tip: Filter by directory path e.g. /media app.js to search for public/media/app.js.
Tip: Use camelCasing e.g. ProjME to search for
Tip: Filter by extension type e.g. /repo .js to search for all .js files in the /repo directory.
Tip: Separate your search with spaces e.g. /ssh pom.xml to search for src/ssh/pom.xml.
Tip: Use ↑ and ↓ arrow keys to navigate and return to view the file.
Tip: You can also navigate files with Ctrl+j (next) and Ctrl+k (previous) and view the file with Ctrl+o.
Tip: You can also navigate files with Alt+j (next) and Alt+k (previous) and view the file with Alt+o.