ITE / code / H_I_D / base_estimators / HRenyi_weightedkNN_estimation.m

function [H] = HRenyi_weightedkNN_estimation(Y,co)
%Estimates the Renyi entropy (H) of Y (Y(:,t) is the t^th sample)
%using the weighted k-nearest neighbor method. Cost parameters are provided in the cost object co.
%We make use of the naming convention 'H<name>_estimation', to ease embedding new entropy estimation methods.
%   Kumar Sricharan and Alfred. O. Hero. Weighted k-NN graphs for Renyi entropy estimation in high dimensions, IEEE Workshop on Statistical Signal Processing (SSP), pages 773-776, 2011. 
%  This code has been written on the basis of implementation kindly provided by Kumar Sricharan.
%Copyright (C) 2012 Zoltan Szabo ("", "szzoli (at) cs (dot) elte (dot) hu")
%This file is part of the ITE (Information Theoretical Estimators) Matlab/Octave toolbox.
%ITE is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
%the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
%This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
%MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
%You should have received a copy of the GNU General Public License along with ITE. If not, see <>.


    [d,T] = size(Y);
    k1 = ceil(0.1*(sqrt(T)));
    k2 = ceil(2*sqrt(T));

%calculate optimal weight (if it does not exist) => wo:
    FN = strcat('wo_weightedkNN_T',num2str(T),'_d',num2str(d),'.mat');
    if ~exist(FN)
        disp(strcat('Computing weights for the weighted kNN method: T=',num2str(T),', d=',num2str(d),'.'));
        dp = d;
        wo = calculateweight(T,d,k1,k2,dp);

cdunitball = volume_of_the_unit_ball(d); %Volume of unit ball in d dimensions
kvec = k1:k2; 
N = floor(T/2);
M = T - N;

%weighted estimator:
    Yn = Y(:,1:N);
    Ym = Y(:,(N+1):T);
    co.k = k2;
    [dists,nnidx] = kNN_squared_distances(Ym,Yn,co,0);
    kdist = sqrt(dists(kvec,:)).';
    %note gamma(kvec)./gamma(kvec+1-alpha) = beta(kvec,1-alpha)./gamma(1-alpha)
    etahatvec = (beta(kvec,1-co.alpha)./gamma(1-co.alpha)).*mean((((M).*cdunitball.*(kdist.^d))).^(1-co.alpha));
    H = (sum(wo .* etahatvec));
    H = log(H) / (1-co.alpha);
Tip: Filter by directory path e.g. /media app.js to search for public/media/app.js.
Tip: Use camelCasing e.g. ProjME to search for
Tip: Filter by extension type e.g. /repo .js to search for all .js files in the /repo directory.
Tip: Separate your search with spaces e.g. /ssh pom.xml to search for src/ssh/pom.xml.
Tip: Use ↑ and ↓ arrow keys to navigate and return to view the file.
Tip: You can also navigate files with Ctrl+j (next) and Ctrl+k (previous) and view the file with Ctrl+o.
Tip: You can also navigate files with Alt+j (next) and Alt+k (previous) and view the file with Alt+o.