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Clone wikiTassel 5 Source / UserManual / FilterMenu / FilterSiteBuilderPlugin
FilterSiteBuilderPlugin
Filter Name - Filter Name (Default: Filter)
Site Min Count - Site Minimum Count of Alleles not Unknown [0‥+∞) (Default: 0)
Site Min Allele Freq - Site Minimum Minor Allele Frequency [0.0‥1.0] (Default: 0.0)
Site Max Allele Freq - Site Maximum Minor Allele Frequency [0.0‥1.0] (Default: 1.0)
Min Heterozygous Proportion - Min Heterozygous Proportion [0.0‥1.0] (Default: 0.0)
Max Heterozygous Proportion - Max Heterozygous Proportion [0.0‥1.0] (Default: 1.0)
Remove Minor SNP States - Remove Minor SNP States (Default: false)
Site Range Filter Type - True if filtering by site numbers. False if filtering by chromosome and position [NONE, SITES, POSITIONS] (Default: NONE)
Start Site - Start Site [0‥+∞) (Default: 0)
End Site - End Site [0‥+∞) (Default: 0)
Start Chr - Start Chr
Start Pos - Start Pos [0‥+∞)
End Chr - End Chr
End Pos - End Pos [0‥+∞)
Include Sites - Include Sites (Default: true)
Position List - Filter based on position list.
Site Names - Filter based on site names.
Bed File - Filter based on BED file.
Chr Pos File - Filter based on list of chromsome / position in file.
Updated