(mateclever) LASER core Error: ShortDnaSequence.cpp Assertion `pos < forward->size()' failed, Error: signal 6

[Cedrick Clarido]

Hello,

I encountered the same issues as Issue #24 from 2017-10-10.

laser-core: /opt/conda/conda-bld/clever-toolkit_1556120556328/work/src/ShortDnaSequence.cpp:103: char ShortDnaSequence::operator const: Assertion `pos < forward->size()' failed.

Error: signal 6:

……

I am using the docker image: quay.io/biocontainers/clever-toolkit:2.4--py36hcfe0e84_6

[Jerome Leconte]

Hello ,

Same problem with Singularity

laser-core: /usr/local/src/clever-toolkit-v2.4/src/ShortDnaSequence.cpp:103: char ShortDnaSequence::operator const: Assertion `pos < forward->size()' failed.
Error: signal 6:
/usr/local/bin/laser-core(_Z14signal_handleri+0x36)[0x55fafbfbd196]
/lib/x86_64-linux-gnu/libc.so.6(+0x46210)[0x7fac8fb3d210]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fac8fb3d18b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fac8fb1c859]
/lib/x86_64-linux-gnu/libc.so.6(+0x25729)[0x7fac8fb1c729]
/lib/x86_64-linux-gnu/libc.so.6(+0x36f36)[0x7fac8fb2df36]
/usr/local/lib/libclever.so.2.0.0(+0x7f3c1)[0x7fac902233c1]
/usr/local/bin/laser-core(+0x63fbb)[0x55fafbfeffbb]
/usr/local/bin/laser-core(_ZN4Read14findNewAnchorsERKNS_23anchor_search_regions_tERKSt6vectorIP16NamedDnaSequenceSaIS5_EEii+0x2e)[0x55fafbff127e]
/usr/local/bin/laser-core(_Z17process_read_pairR18read_pair_record_tR13read_output_tRK12parameters_t+0xa5a)[0x55fafbfc0c6a]
/usr/local/bin/laser-core(_ZN10ThreadPoolI14work_package_t15output_writer_tE11thread_mainEPv+0x58d)[0x55fafbfdcc8d]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x9609)[0x7fac90183609]
/lib/x86_64-linux-gnu/libc.so.6(clone+0x43)[0x7fac8fc19293]

We use

singularity version 3.5.3

with ubuntu 20.04 container OS , the host is debian 9

Best regards